Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15l21
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.37 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    28   0.87 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.5  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   3.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   4.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.6  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   4.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.6  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   6.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   8.1  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   8.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   8.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -1

Query: 293 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 114
           +A   N  +E    ++ ND  N  N PT +    VV ++E  +ASN +++  +     D 
Sbjct: 24  QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDA 83

Query: 113 MECLLKTTDNL 81
                +T++N+
Sbjct: 84  STQSPETSENV 94


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -1

Query: 254 KQQPNDYLNYYNNPTPDGA-DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG 78
           KQ   DY     NP   G  +  ++  E +    F+  +N +  +  +         ++G
Sbjct: 117 KQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFLYNGTESPVGSMG 176

Query: 77  EAVSSAYYSESLELPVAEQPS 15
           +A+   +  +  +LP AEQP+
Sbjct: 177 KALQEVFERQLKQLPDAEQPA 197


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
 Frame = -1

Query: 356 NQTTMTQINFNASYTSAPTP-SRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGAD--TVV 186
           + T +T +N   + +++ TP S  S  N  +       P   +N     +       +V 
Sbjct: 304 SSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVN 363

Query: 185 SDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSA--YYSESLELPVAEQPS 15
           S + T+A+S  L SVNS +  +     L         +VSS    Y+ S  LP +   S
Sbjct: 364 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 290 ASFDNGYSE-FCDKQQPNDYLN 228
           AS+D+   E +CDK  P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 203 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 304
           H  WD    C+  + +  +V Y KT N +   TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 152 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 271
           K  ++  S   ++ C +  +WDC     + WA +    LN
Sbjct: 71  KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 353 QTTMTQINFNASYTSAPTPSRASF 282
           Q +  + +FNA+   APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 164 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 304
           L Q++C++L        D Y  S S   V  HK +   C TT   AS
Sbjct: 61  LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = -1

Query: 215 PTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVS---SAYYSES 45
           P  D +  +  +   AA  +   S+++L  D+D  E  +  T+N+   ++    A  S++
Sbjct: 201 PFRDASTDLFDEHAHAAPMHSSISISTLLSDSDRYEPHVSLTENISPVMAPSIDARLSQT 260

Query: 44  L--ELPVAEQPSPSSA 3
           +   LP A++ SP+S+
Sbjct: 261 ILRGLPPAQKLSPNSS 276


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 164 ASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVAEQPSPSS 6
           + NF  S  S    ND ++ LL+ T+   +  SS  +S S E  + E  S SS
Sbjct: 8   SKNFQFSEGSRESSNDELKVLLRDTETKEDEKSS--FSNSEEESIIENLSDSS 58


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 227 YYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDND 117
           YY+  TP+   TVVS + T+  S   AS +  + + D
Sbjct: 568 YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQD 604


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 79  PRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTV 195
           P   ++L KH I  L+SVN+  +  K      + +D  +
Sbjct: 67  PSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNI 105


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 215 PTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSES 45
           P+P      +  +ET   S F A ++ L  + +  + LLK  +NL +  S  + S S
Sbjct: 336 PSPFFHIPYIPKTETLNDSQFAAGLSLLASELESQKNLLKKFENLKKKSSKDFLSPS 392


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 257 DKQQPNDYLNYYNNPTPDGADTVVSD 180
           D  QPN YL  Y NP     D  + D
Sbjct: 503 DLPQPNIYLTRYTNPPKSLLDNCILD 528


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 308 APTPSRASFDNGYSEFCDKQQPNDYLNYYNNP-TPDGADTVVSDSETAAASNFLASVNSL 132
           +P P  +S D+  S        N++L       T D  D+V+SDS T    +    VNSL
Sbjct: 290 SPPPGLSSMDSNGSSI-----ENNFLYTKRRANTSDSFDSVLSDSSTTPTISSSVQVNSL 344


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -1

Query: 215 PTPDGADTV--VSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESL 42
           P  +  DTV  ++D E  +        +  +     +  +  TT +  +A   A   +  
Sbjct: 243 PEEETVDTVEEIADEEKHSVKEESGEASPQSSQQSTITSISTTTRSTRKAKREAAAEDKA 302

Query: 41  ELPVAEQPSPS 9
           +LP A  P PS
Sbjct: 303 DLPAAVAPKPS 313


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 1    EAELGDGCSATGSSRDSE**AELTASPRLSVVLSKHSIISLSSV--NELTLAKKFEAAAV 174
            E +     SATGSS  S   A ++ S   SV  +  +  S SS+    +T +     A  
Sbjct: 961  EVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATA 1020

Query: 175  SLSDTTVSA 201
            S++D++ S+
Sbjct: 1021 SVTDSSTSS 1029


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,387
Number of Sequences: 5004
Number of extensions: 43415
Number of successful extensions: 163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)