Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15l20
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   2.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 58  LFYNIVSTIFDYHFDLDENI 117
           +F++I  TI DY+    EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 58  LFYNIVSTIFDYHFDLDENI 117
           +F++I  TI DY+    EN+
Sbjct: 416 VFFSIYKTILDYYHKYKENL 435


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 58  LFYNIVSTIFDYHFDLDENI 117
           +F++I  TI DY+    EN+
Sbjct: 42  VFFSIYKTILDYYHKYKENL 61


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 300 ITNCDIEVPISSQLPLFRT*NNNWSP-IMFEYIRTII 193
           +TN D  V I S+  L  +   NW P   +++++ I+
Sbjct: 19  LTNADNSVHILSKYQLITSTTLNWLPRTHYDHLKEIV 55


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 239 FYVRNNGSWLEIGTSISQFVIVQVITLF 322
           F  R  GSW+ I   I +F  +   TLF
Sbjct: 123 FPPRPMGSWISIQEQIPRFRHIGPSTLF 150


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 256 WELAGNWNFNITVRNR-TSYNLVHC 327
           +E++GNW+F   + +   S++++ C
Sbjct: 101 YEISGNWSFGTIMCDLWVSFDVLSC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,774
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)