Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15k24
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 33 0.11
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 29 1.8
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 28 4.2
11_03_0181 - 11301759-11301838,11302294-11303095 28 5.6
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 27 7.4
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 27 7.4
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 27 9.8
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 27 9.8
04_03_0641 + 18261332-18262423 27 9.8
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 225 QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 401
+E+ ++ KI+ Y Q+++ + QIK N S T +++ Q + NK+F +S
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401
Query: 402 SISSNEV 422
S E+
Sbjct: 1402 FACSEEL 1408
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 234 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 404
NN++ + + +S+ V ++QNR S +LQ LT L+ N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337
Query: 405 ISSNEVLDNIDLEYD 449
+ + L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 488
SSN K +E++ LQF TP N + V ++ +L +D E DD V + E
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570
Query: 489 SSHW 500
+++W
Sbjct: 571 TNYW 574
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 403 AFQATKCWTTSIWNMT---TALILTF--TMNTNRPRI 498
AF KCWT+ +W+ T T L+ T+ T +T+ R+
Sbjct: 229 AFPHVKCWTSPVWSATSRPTVLLSTWQVTCSTSSHRV 265
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 378 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 488
F++ E +E+ IDL D + FD+YD YEP
Sbjct: 353 FVSTEAETDHPESELKPGIDLLGQVDELFFDIYDRYEP 390
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 378 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 488
F++ E +E+ IDL D + FD+YD YEP
Sbjct: 353 FVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEP 390
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 539 WSKAFRVGYS----HVAPMRGRFVFIVNVKINAVVI 444
W+ AFRV YS + P+ G F +++ + VV+
Sbjct: 159 WNSAFRVTYSRMMLYTTPVHGTFYYVLRYEAEYVVL 194
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 273 VST-CKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYD 449
+ST CK + +++ S + +E Q++ ++ ++ + I + D++ N DN DL +
Sbjct: 379 ISTDCKPEQSGPKDQVSEVNQDLESQIKCVS-ISPDDILVNKNDNVEGNMNADNFDLGLE 437
Query: 450 DGVDFDVYDEYEPSSHWSNMTVSD 521
D PSS ++ D
Sbjct: 438 SKQDIVKPSSSNPSSVGDDLQTPD 461
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 349 SCFSMRVLMLLDLFCFICLTFLQVETCASYN 257
SC + +L + +L F CL L++E+C + N
Sbjct: 241 SCRQLALLPIDELHRFSCLEVLRIESCPNLN 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,708,862
Number of Sequences: 37544
Number of extensions: 221931
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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