Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15k19
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 248 2e-66
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 29 2.4
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 29 2.4
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 29 2.4
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 29 2.4
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 4.2
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 4.2
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 5.5
Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical pr... 27 7.3
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 9.6
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 9.6
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 248 bits (608), Expect = 2e-66
Identities = 110/165 (66%), Positives = 139/165 (84%)
Frame = +2
Query: 86 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 265
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 266 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 445
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120
Query: 446 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 580
V +P NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GD
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGD 165
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 58.0 bits (134), Expect = 5e-09
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%)
Frame = +2
Query: 59 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 238
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 239 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 412
GKN ++ A+ + A L K +KG G +FT EV + E +
Sbjct: 65 RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124
Query: 413 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 580
AR G +A +VV+P + + L +PTK+ KG I + + K G+
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGE 181
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 243 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SWRSVTNCWRTKSKLQ 416
CSW P S+T + QP+ N R C+P +S W T S+
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332
Query: 417 LVPVPLPHCQSSFP 458
+P P P+ + P
Sbjct: 333 TLPTPAPYVSTQAP 346
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
+ P RN CH S SP +SW + T+ ++K VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 41 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 154
L+ K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 450 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 340
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 389 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 538
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
>Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical
protein F32B4.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 400 VLQQFVTDLHEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 251
+L DL E S HE+ LDVW++ L Q + G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = +3
Query: 234 PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSWRSVTNCWRT 401
P C+ + C T ++P+ C H + T CSP + C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162
>Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical
protein T23G5.1 protein.
Length = 788
Score = 27.5 bits (58), Expect = 7.3
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Frame = +2
Query: 104 ATWKSNYFVKIIQLLDEYP---KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRK 274
A W + F+K ++ E+ C G D+ ++ + + V + T+ +
Sbjct: 337 ALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYEAEGRV---RKTVKAR 393
Query: 275 AIKDHLDNNPALEKLLPHI--KGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 448
+ +H+ +N +E LP+I K + +L ++ L ++ + P IA ++
Sbjct: 394 KLWEHIVSNQ-IETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNL 452
Query: 449 VIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 562
A N + PEK F L+ TK+ + I DV+
Sbjct: 453 ASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVN 490
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 59 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 229
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 230 GSSIVLMGKNTMMRKAIKD 286
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 59 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 229
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 230 GSSIVLMGKNTMMRKAIKD 286
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,468
Number of Sequences: 27780
Number of extensions: 335697
Number of successful extensions: 1043
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -