Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k17
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   2.1  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    25   6.4  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.4  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   8.5  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 302 KPVKHDQRGSRSTVSPG*IPTETTQATPGSSSTCFAP 412
           KP      GS +TV+P    T T  + P +S+T  AP
Sbjct: 230 KPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAP 266


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 357 SRPR-RHKQRLGPPRLVSRQADYSSVIRLH 443
           + PR R+KQR G PRL  R A+  +  +++
Sbjct: 2   ANPRQRNKQRSGKPRLTRRNANKKAKAKIY 31


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 126 LKLVCQFCRVPVTEVSNHS 70
           ++++C FCR P+   SN +
Sbjct: 774 IRIICNFCRKPIFPFSNRN 792


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 352 LNPDRDDTSNAWVLLDLFRARLTIHLSLDF 441
           LN   +DT+ +W  LDL++ R ++  S  F
Sbjct: 204 LNMQLEDTAQSWYTLDLWQGRHSLLYSRIF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,624
Number of Sequences: 5004
Number of extensions: 42651
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)