Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k17
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 233 EKSEKCNLRTGNYPTAPPKS 174
           E  EKC+ RTG      PKS
Sbjct: 374 EIKEKCDRRTGKTTEENPKS 393


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 233 EKSEKCNLRTGNYPTAPPKS 174
           E  EKC+ RTG      PKS
Sbjct: 85  EIKEKCDRRTGKTTEENPKS 104


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 76  IRNFSHWNPTELTY-QFKYP 132
           +RN  HW P   TY + +YP
Sbjct: 222 LRNIVHWTPFFQTYKKQRYP 241


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 76  IRNFSHWNPTELTY-QFKYP 132
           +RN  HW P   TY + +YP
Sbjct: 137 LRNIVHWTPFFQTYKKQRYP 156


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 76  IRNFSHWNPTELTY-QFKYP 132
           +RN  HW P   TY + +YP
Sbjct: 456 LRNIVHWTPFFQTYKKQRYP 475



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 2  HIIRGLTFTFGLYHGLCEPDQF 67
          H++RG+      YH  C  D F
Sbjct: 5  HVVRGIEHGGLYYHQRCSRDWF 26


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 339 QSLRAKSRPRRHKQRL 386
           Q++  + +PR+H+QRL
Sbjct: 275 QTIGGQIKPRKHEQRL 290


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 311 KHDQRGSRSTVSPG*IPTETTQATPGSSSTC 403
           K + +  +STVS   +P   T +   +SSTC
Sbjct: 550 KQELKRLKSTVSLLPLPLARTPSVMSASSTC 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,645
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)