Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k11
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    30   0.26 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   0.60 
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   3.2  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   3.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.2  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   5.6  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   9.7  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 70  IGGSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNS 249
           + G +  +P EP  +   S+   S        HND  ++ N I  L P R+    +SS +
Sbjct: 173 VSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRA 232

Query: 250 PILSTEEIQ 276
              S    Q
Sbjct: 233 DRSSVRRSQ 241


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 479 TSVATSTRDPTPISSCKIS--TEAFGIGATARGEPKAGES*TFSRCSALHTSTKIPVS 312
           TS+ TST  P  +SS  +S  T ++    T  G      S T S       S+ IP S
Sbjct: 247 TSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTS 304


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 211 PDRRRIKSTSSNSPILSTEEIQQKP 285
           PD   + STSSN P  S + +  KP
Sbjct: 12  PDSSVVDSTSSNFPNASNDSVHDKP 36


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 226 IKSTSSNSPILSTEEIQQKPKMIQE 300
           +  T S  P++  EE+++K K +QE
Sbjct: 746 LSHTLSEDPLIKVEELEEKAKRLQE 770


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 181 KSANLIAHLAPDRRRIKSTSSNSPILSTEEIQQKPKMIQEPKTVETGILVDVCSAEQREN 360
           KSA + +HL    +  K+ S   PI   +EI+   K + E KT  + +  D+   + R++
Sbjct: 703 KSAEVYSHLETLTKTFKNLSEAKPIF--DEIELLDKRLSETKTELSDLQGDLQGLDIRKD 760

Query: 361 VYDS 372
              S
Sbjct: 761 EIQS 764


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 241 SNSPILSTEEIQQKPKMIQEPKTVETGILVDVCSAEQRENVYDSPALGSPRAVAPIPKAS 420
           S S  LSTEEI  +    +EP T +    VD    +  ++V+        R  + IP  S
Sbjct: 617 SASEKLSTEEIIPQESNFEEPSTTKKEGNVDT-KEDGNDDVFSLVNASPMRPASTIPSHS 675

Query: 421 VD 426
            D
Sbjct: 676 CD 677


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 482 STSVATSTRDPTPISSCKISTEAFGIGATARGEPKAGES*TFSRCSALHTSTKIPVST 309
           + S+    R P+PI S   +  +F +   A     +  S T S  SAL TS+K+  ST
Sbjct: 503 TVSIHMDGRQPSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSFPSAL-TSSKVSSST 559


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 534 CSVINDTNPPHNSVVMLIYICSNLHQGSHA 445
           CSV+   +PP N  V  +        GSHA
Sbjct: 423 CSVLRSQSPPQNIFVSALLNAGYRVSGSHA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,343
Number of Sequences: 5004
Number of extensions: 46218
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)