Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k11
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1376 - 36757458-36757923,36758040-36758473                       29   1.8  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   2.4  
12_01_0069 + 598704-598784,599161-599277,600681-600872,601004-60...    28   4.3  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   5.6  
06_02_0220 - 13205700-13205863,13205977-13206046                       27   9.9  
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    27   9.9  
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    27   9.9  

>01_06_1376 - 36757458-36757923,36758040-36758473
          Length = 299

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 511 STSQLRSNVDLHL*QPPPGIPRRFHLVKYLPKLLESAPQPEVNPKLENRRHF 356
           ++ QL S VD     PPP +  + H +  LP  L  +  P  N KLE    F
Sbjct: 225 ASDQLGSLVDTKPVPPPPSLGAQRHFMSPLPGALGVSHHPYGNVKLEPNASF 276


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +1

Query: 73  GGSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSP 252
           GGS      EP+    G   ++STA M RN+ N +++   L A  +    +++  SS+ P
Sbjct: 198 GGSTGGVKLEPQM---GQPDQNSTAQMMRNASNVKIEPPQLQALRSLSAVKMEQQSSD-P 253

Query: 253 ILSTEEIQQKPKMIQEPK 306
               ++ QQ+  ++Q  K
Sbjct: 254 SAFLQQQQQQQHLLQLTK 271


>12_01_0069 +
           598704-598784,599161-599277,600681-600872,601004-601018
          Length = 134

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 313 ETGILVDVCS--AEQRENVYDSPA-LGSPRAVAPIPKASVDILQDEIGVGSLVEVATDVD 483
           ET ILVD      E ++ V   P  LGS  +  P+P+ SV  ++ E   G  + V+ +  
Sbjct: 30  ETSILVDASKYIKELKDKVSQEPEQLGSTSSSMPMPRVSVSSVELEKKRGFRINVSMEKS 89

Query: 484 Q 486
           Q
Sbjct: 90  Q 90


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 76  GSWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPI 255
           GS   A  +P CA+  + +  ST    +      + ++++ + L+P R  ++STS++   
Sbjct: 689 GSSFQANGDPTCANTSTDANESTQLELKRKSFLSLSTSSIFSPLSPRRNLLRSTSTDLSF 748

Query: 256 LS 261
           LS
Sbjct: 749 LS 750


>06_02_0220 - 13205700-13205863,13205977-13206046
          Length = 77

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 RKCLRFSSFGFTSGCGADSK 413
           R C+ + S+G  +GCGAD K
Sbjct: 29  RCCVDYHSWGGNTGCGADQK 48


>06_02_0200 -
           12946139-12946282,12947636-12947842,12949506-12949629,
           12950167-12950369,12950922-12951620,12951723-12951784,
           12952395-12952404,12954905-12957631
          Length = 1391

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 373 PALGSPRAVAPIPKASVDILQDEIGVGSLVEVATDVDQHYYGVV 504
           P  GSP  VAP+P +S         V  L     D  +H   VV
Sbjct: 109 PWAGSPSLVAPLPPSSSSAGSSSASVAILCHAPDDGGRHVSAVV 152


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/101 (19%), Positives = 37/101 (36%)
 Frame = +1

Query: 79  SWPPAPREPECADYGSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPIL 258
           +WPP P+E   A   +        +      DR     +  H    R+  ++T + S + 
Sbjct: 289 AWPPQPKEMPFASTAAAPMAPAVNLHHEMGRDRA-GRTMPVHKTEARKAPEATVATSSVC 347

Query: 259 STEEIQQKPKMIQEPKTVETGILVDVCSAEQRENVYDSPAL 381
           S           Q+ +  +       CSA Q +++ D P +
Sbjct: 348 SGNGAGSDELWRQQKRKCQAQA---ECSASQDDDLDDEPGV 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,641,291
Number of Sequences: 37544
Number of extensions: 321928
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)