Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k11
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126413-1|AAI26414.1|  711|Homo sapiens C10orf71 protein protein.     36   0.071
AF307451-1|AAK30049.1|  578|Homo sapiens Cat eye syndrome critic...    32   1.5  

>BC126413-1|AAI26414.1|  711|Homo sapiens C10orf71 protein protein.
          Length = 711

 Score = 36.3 bits (80), Expect = 0.071
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +1

Query: 88  PAPREPECADY--GSMSKHSTATMQRNSHNDRVKSANLIAHLAPDRRRIKSTSSNSPILS 261
           PA R P       G   K  +    R+S+    K+ +L+ +L   R+R+KST S+SP+L 
Sbjct: 464 PAERTPSPPGQLNGYQEKEPSECQSRDSYKS--KAPSLLFNLKDVRKRVKSTYSSSPLLK 521

Query: 262 TEEIQQKPKMIQEPKTVETGILV 330
             + + + K+  + + V  G+++
Sbjct: 522 VLDEKTRGKVDGKQEPVSNGVIL 544


>AF307451-1|AAK30049.1|  578|Homo sapiens Cat eye syndrome critical
           region candidate gene number 6 protein.
          Length = 578

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 482 STSVATSTRDPTPISSCKISTEAFGIGATA 393
           S+S ATS+   TP SSC ++   FG GA A
Sbjct: 114 SSSAATSSSTSTPTSSCSMTAADFGGGAAA 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,138,930
Number of Sequences: 237096
Number of extensions: 1818306
Number of successful extensions: 4376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4376
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)