Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15k11
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 177 SVIV*IALHGCCGVLRH*SIISTLRFS 97
           S+I  I+  GCCG +R  S   T+ F+
Sbjct: 60  SIIFVISFFGCCGAIRE-SHCMTITFA 85


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 114 STLRFSRSRWPASS 73
           +T  +S +RWPA+S
Sbjct: 772 ATSNYSTTRWPATS 785


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 54  NPN*KVSHIFVCFHKIK 4
           N + K+S IF CF K K
Sbjct: 111 NVHIKISKIFQCFMKYK 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,329
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)