Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15k07
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 75 2e-15
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 75 2e-15
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 0.60
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 0.80
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 27 0.80
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 26 1.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 1.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 1.8
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 1.8
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 4.3
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 4.3
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 7.5
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 23 9.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 23 9.8
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 23 9.8
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 23 9.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 9.8
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 75.4 bits (177), Expect = 2e-15
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +1
Query: 37 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 165
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCG 43
Score = 58.4 bits (135), Expect = 3e-10
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = +2
Query: 164 DAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 298
+ +KR+ GIW C K CK+ +AGGAW +T AA+S RS +RRLRE+
Sbjct: 45 NTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 75.4 bits (177), Expect = 2e-15
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +1
Query: 37 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 165
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCG 43
Score = 58.4 bits (135), Expect = 3e-10
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Frame = +2
Query: 170 MKRSCVGIWSC--KRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 298
+KR+ GIW C K C +T+AGGAW +T AA+S RS +RRLRE+
Sbjct: 47 VKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 0.60
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 17 YRRGLPKWPNVPKRLELL----ANMAHVTV--PLYVKWSKRW-K*PNTQSILAHFVDAMK 175
YR+ LP P++P R+E L ++ H T+ L ++ S + NTQ AH + +M+
Sbjct: 427 YRKRLPHSPSMPSRVEFLPALESSQFHETLNSELSLQLSDDFVLYKNTQEENAHLMLSME 486
Query: 176 RSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAV 280
+ C + + G FS+ + + V
Sbjct: 487 KECANFYEYAKTAIYENNGRITFSSLLPNDLKRPV 521
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 0.80
Identities = 23/88 (26%), Positives = 33/88 (37%)
Frame = -3
Query: 324 FYVYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASTK*ASI 145
F V L++ SR L + ++ VLL L D + E K I
Sbjct: 574 FLVEVLDFLMSRAALQKNESEQKEESVVLSIDTVNVLLTTLMDNVSISEEVSEHIKDVQI 633
Query: 144 LCVLGYFHLFDHFT*RGTVTCAIFASNS 61
LC+ Y LF R ++ A +NS
Sbjct: 634 LCLQVYPRLFSLGHDRDSIVIATNTTNS 661
>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 155
Score = 27.1 bits (57), Expect = 0.80
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 137 TQSILAHFVDAMKRSCVGIWSCKRCKRTVA-GGAWVFS 247
T++ + ++D K S ++ CK+C + V AWV S
Sbjct: 4 TETSHSGYIDFKKESQPSVFQCKKCFQIVGDSNAWVIS 41
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 109 MVKKMEVTQHAKYTCSFCGCYETFLCRHLVL*AMQEDCSRRSLGILH 249
+V K E+++ T G + +LC+ L + E C S+G+LH
Sbjct: 219 LVAKRELSRRQNRTD---GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 1.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 146 ILAHFVDAMKRSCVGIWSC 202
+++H VD + ++C IW C
Sbjct: 688 LVSHDVDFLDKTCTSIWQC 706
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 120 LFDHFT*RGTVTCAIFASNSNLFGT 46
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 85 VCHICQ*FQPFWYVWPF 35
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 122 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 24
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 4.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 155 HFVDAMKRSCVGIWSCKRCKRT 220
H + K IW+CK C++T
Sbjct: 53 HSIPGSKGEANLIWTCKNCRKT 74
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 24 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 155
EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 309 LNYFTSRNLLTADLHDEAAVVEN 241
L+Y + N TAD HDE+ EN
Sbjct: 676 LSYASVFNEATADSHDESQGAEN 698
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 23.4 bits (48), Expect = 9.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +2
Query: 170 MKRSCVGIWSCKRCKR 217
+K C +W C+ CK+
Sbjct: 28 LKLKCDRVWPCENCKK 43
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +1
Query: 118 KMEVTQHAKYTCSFCGCYETF 180
K E Y C+F GC + F
Sbjct: 561 KSESKSQGNYVCTFAGCNKRF 581
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 330 IFFYVYYLNYFTSRNLLTADLHDEA 256
+F Y+Y+ ++ ++ ADL D A
Sbjct: 375 VFVYMYFQSFIAEKSTSVADLLDTA 399
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 3 FVNFCIGEVYQNGQTYQ 53
FVN CI +Y+NG + +
Sbjct: 537 FVNTCINVLYKNGDSLE 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,690
Number of Sequences: 5004
Number of extensions: 28840
Number of successful extensions: 97
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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