Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15k07
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 80 4e-16
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 79 9e-16
07_01_0119 - 908600-909592,909685-909885 28 1.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 2.9
12_01_0154 + 1179461-1179774,1180154-1180199 27 3.9
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 27 3.9
07_03_1237 + 25073010-25073513 27 5.1
03_05_0821 - 27960414-27961253 27 5.1
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 6.7
11_01_0157 + 1299635-1299952 26 6.7
02_01_0679 - 5048653-5051394 26 6.7
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 80.2 bits (189), Expect = 4e-16
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +1
Query: 34 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 165
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCG
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 68
Score = 54.8 bits (126), Expect = 2e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +2
Query: 167 AMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLRE 295
A+KR VGIW CK C + AGGA+ +T +A + RS +RRLRE
Sbjct: 71 AVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 79.0 bits (186), Expect = 9e-16
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +1
Query: 43 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCG 165
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCG
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 73
Score = 54.8 bits (126), Expect = 2e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +2
Query: 167 AMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLRE 295
A+KR VGIW CK C + AGGA+ +T +A + RS +RRLRE
Sbjct: 76 AVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 118
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 28.3 bits (60), Expect = 1.7
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 8 QLLYRRGLPKWPNVPKRLE-LLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVDAMKRSC 184
+LLYRR L P+ ++ +L+N + L V RW+ + LA +
Sbjct: 195 ELLYRRRLGSVEFFPRDIDAVLSNALSLGTFLAVPRGTRWR--GVEGFLAS--PPASWAV 250
Query: 185 VGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVR 283
+W+CK R GA AA + R+A R
Sbjct: 251 ASLWNCKDAFRLEVRGAPRLWRAAARATRAADR 283
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 170 MKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 292
+KR+ G W C RC+ + + A +S R RR+R
Sbjct: 63 LKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>12_01_0154 + 1179461-1179774,1180154-1180199
Length = 119
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 139 AKYTCSFCGCYETFLCRHLVL*AMQEDCS 225
A C+ CGC+++F R + A + DCS
Sbjct: 67 AALLCAACGCHQSFHRREVEAAAAECDCS 95
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 19 SERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGCYETFLCRHL- 195
S +FT + RT+ Y +Y + + ++ +V + TCS GC +T + + L
Sbjct: 125 SNKFTVVGCRTQAYIADQDYVGKYMSGCVSVCRRGDVWKATNGTCSGIGCCQTAIPKGLD 184
Query: 196 VL*AMQEDCSRRSLGI 243
A +D S + GI
Sbjct: 185 YYQAFFDDSSMNTSGI 200
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 173 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 268
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>03_05_0821 - 27960414-27961253
Length = 279
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 98 LYVKWSKRWK*PNTQSILAHFVDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASS 265
L ++W RWK T+ +A F+ + S V +W W F+ +S
Sbjct: 195 LGLRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNAS 250
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 2 LCQLLYRRGLPKWP 43
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>11_01_0157 + 1299635-1299952
Length = 105
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 139 AKYTCSFCGCYETFLCRHLVL*AMQEDCS 225
A C+ CGC+ +F R + A + DCS
Sbjct: 67 AALLCAACGCHRSFHRREVEAAAAECDCS 95
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +2
Query: 8 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 127
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,166
Number of Sequences: 37544
Number of extensions: 187043
Number of successful extensions: 500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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