Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15j15
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.71 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 271 FTNRHGSSLVEPISVRKIENLRNMGQ--QTSRKSGECTC 381
           FT  H   + E + +  IENLRN  +    +R   EC C
Sbjct: 323 FTTVHRICIGETMPMELIENLRNHPEYIDETRNYQECKC 361


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 356 DVCCPMFLRFSIFRTLIGSTSELPC 282
           +V CP++    +   +I S  EL C
Sbjct: 316 EVLCPLYKYLQLIENVIPSNEELIC 340


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 356 DVCCPMFLRFSIFRTLIGSTSELPC 282
           +V CP++    +   +I S  EL C
Sbjct: 331 EVLCPLYKYLQLIENVIPSNEELIC 355


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 66  FLSKIVNVTL*ILNYSLINISRNH 137
           FLS I  V   I +  L+N+S NH
Sbjct: 537 FLSDINGVFTSIASLLLLNLSENH 560


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 132 FGKYLLKSNSV 100
           FG Y++K+NSV
Sbjct: 488 FGNYIIKNNSV 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,193
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)