Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15j13
(581 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC051302-1|AAH51302.1| 125|Homo sapiens mitochondrial ribosomal... 93 5e-19
BC010076-1|AAH10076.1| 125|Homo sapiens mitochondrial ribosomal... 93 5e-19
BC004976-1|AAH04976.2| 125|Homo sapiens mitochondrial ribosomal... 93 5e-19
BC000547-1|AAH00547.2| 125|Homo sapiens mitochondrial ribosomal... 93 5e-19
AY061855-1|AAL35739.1| 125|Homo sapiens mitochondrial ribosomal... 93 5e-19
AB049942-1|BAB40995.1| 166|Homo sapiens mitochondrial ribosomal... 93 5e-19
BC042752-1|AAH42752.1| 96|Homo sapiens MRPS6 protein protein. 63 6e-10
AB051347-1|BAB54937.1| 35|Homo sapiens mitochondrial ribosomal... 40 0.008
L37378-1|AAA74451.1| 1108|Homo sapiens guanylyl cyclase protein. 30 6.8
AL031387-4|CAB41303.1| 1108|Homo sapiens guanylate cyclase 2F, r... 30 6.8
AK125475-1|BAC86173.1| 913|Homo sapiens protein ( Homo sapiens ... 30 6.8
>BC051302-1|AAH51302.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105
>BC010076-1|AAH10076.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105
>BC004976-1|AAH04976.2| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105
>BC000547-1|AAH00547.2| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105
>AY061855-1|AAL35739.1| 125|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 125
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 60
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 61 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 105
>AB049942-1|BAB40995.1| 166|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 166
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +3
Query: 87 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 266
MP YELAL+L+ M +PE +LKR A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 42 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR 101
Query: 267 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFK-VKEEERKAC 398
YF+ PT AV + E RD+D++R K +E K C
Sbjct: 102 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKEC 146
>BC042752-1|AAH42752.1| 96|Homo sapiens MRPS6 protein protein.
Length = 96
Score = 63.3 bits (147), Expect = 6e-10
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 177 DCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVR 356
D G I+R++ENLG R +PY+ +AH H YF+ PT AV + E RD+D++R
Sbjct: 2 DRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAPTAAVESMVEHLSRDIDVIR 61
Query: 357 QRFFK-VKEEERKAC 398
K +E K C
Sbjct: 62 GNIVKHPLTQELKEC 76
>AB051347-1|BAB54937.1| 35|Homo sapiens mitochondrial ribosomal
protein S6 protein.
Length = 35
Score = 39.5 bits (88), Expect = 0.008
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 168 AIFDCGGIIRNIENLGFRPMPYKSTAHGMTH 260
A+ D G I+R++ENLG R +PY+ +AH H
Sbjct: 1 ALMDRGAIVRDLENLGERALPYRISAHSQQH 31
>L37378-1|AAA74451.1| 1108|Homo sapiens guanylyl cyclase protein.
Length = 1108
Score = 29.9 bits (64), Expect = 6.8
Identities = 13/49 (26%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 306 AVIDLKEEYKRDV-DIVRQRFFKVKEEERKACTLEEELLPPAYREDVQK 449
+++ + E+Y ++ D++R+R +++ E++K L ++LPP+ E ++K
Sbjct: 823 SMLRMLEQYSSNLEDLIRERTEELEIEKQKTEKLLTQMLPPSVAESLKK 871
>AL031387-4|CAB41303.1| 1108|Homo sapiens guanylate cyclase 2F,
retinal protein.
Length = 1108
Score = 29.9 bits (64), Expect = 6.8
Identities = 13/49 (26%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 306 AVIDLKEEYKRDV-DIVRQRFFKVKEEERKACTLEEELLPPAYREDVQK 449
+++ + E+Y ++ D++R+R +++ E++K L ++LPP+ E ++K
Sbjct: 823 SMLRMLEQYSSNLEDLIRERTEELEIEKQKTEKLLTQMLPPSVAESLKK 871
>AK125475-1|BAC86173.1| 913|Homo sapiens protein ( Homo sapiens
cDNA FLJ43486 fis, clone OCBBF3003592, weakly similar
to Dynein beta chain, flagellar outer arm. ).
Length = 913
Score = 29.9 bits (64), Expect = 6.8
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Frame = +3
Query: 120 NMPKPELKTSL---KRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKI 290
N+ PELK KRI + G++ +ENL F P KS+ + I
Sbjct: 304 NIFGPELKAVTGDPKRIDDVLCRVDGLVTPMENLTFDPFSIKSSQFWKYVMDEFKIEVLI 363
Query: 291 DTPTKAVIDLKEE---YKRDVDIV------RQRFFKVKEEERKACTLEEELLPPAYREDV 443
D K + E YK + R FF++K + ++E L +E
Sbjct: 364 DIINKIFVQNLENPPLYKNHPPVAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQEVK 423
Query: 444 QKMIQIGKT 470
QK +++G+T
Sbjct: 424 QKYLEVGRT 432
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,407,026
Number of Sequences: 237096
Number of extensions: 1511989
Number of successful extensions: 3182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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