Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15j13
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.72 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   5.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 167 CYIRLRRNHQKHRKFRISTNALQVHCTWYDPQRSQL 274
           C+ R  R+H      R+ T     HC+  D Q  Q+
Sbjct: 15  CHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQV 50


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 129 KPELKT-SLKRISHAIFDCGGI 191
           K ELK  ++  +S  +FDCGG+
Sbjct: 267 KLELKWFAVPAVSGMVFDCGGL 288


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 527 FPKVSRKMYCFFNCAIK 577
           FP+   K+ C+FNC ++
Sbjct: 62  FPE-DEKLKCYFNCVLE 77


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 423 PAYREDVQKMIQ--IGKTQVNRFTYKFKYN 506
           PAYR +VQK I    G  + +   Y +++N
Sbjct: 102 PAYRAEVQKAISECKGIAKGDNCEYAYRFN 131


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 365 FQSQRRRKKSL 397
           F+ Q+RRKKSL
Sbjct: 120 FEEQKRRKKSL 130


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 159 SSSMKFLIQVSACFVTIKQVH 97
           S+   FL+Q+ +CF T+ +++
Sbjct: 41  STKPPFLVQLHSCFQTMDRLY 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,699
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)