Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15j10
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 56 3e-09
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 30 0.25
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 28 1.0
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 26 4.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 4.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.4
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 5.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.5
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 25 9.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 56.4 bits (130), Expect = 3e-09
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Frame = +2
Query: 101 KLEDLALKLFSIDAVKFGDFTTKTGIKTPAYFDLRVIVSYPDIMELTSNMLYDLAVKDSQ 280
KLE L + + +KFG FT K+G K+P +F+ D+ L + +
Sbjct: 4 KLE-LLRRALEHNVLKFGTFTLKSGRKSPYFFNSGNFTHGADLCALAEAYAETIIAMNVD 62
Query: 281 FDHLCGVPYTALPIATLLSIQAKKP------MLMRRKETKSYGTKKSIEGHFKKDDTCLI 442
FD + G Y + +A + +++ + RKE KS+G ++ G + L+
Sbjct: 63 FDVIFGPAYKGISLAAITAVKLYEKTGKSYGFAYNRKEAKSHGEGGNLVGAEMEGKKVLL 122
Query: 443 IEDVITSGSSILETVKDLK 499
++DVIT+G++I E + L+
Sbjct: 123 LDDVITAGTAIREAISFLE 141
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.9 bits (64), Expect = 0.25
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 287 HLCGVPYTALPIATLLSIQA----KKPMLMRRKETKSYGTKKSIEGHFKKDD 430
HLC +PYT P +++ I+ K RR S T+KSI H K D
Sbjct: 539 HLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSI-SHSKNTD 589
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 528 QLL*LRALHFFKSLTVSSMLEPDVMT-SSMMR 436
Q L R+L F+KS+T S M+ DV+ SS MR
Sbjct: 652 QNLWFRSLPFWKSMTTSFMMSQDVLNFSSYMR 683
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 347 KKPMLMRRKETKSYGTKKSIEGHFKKDDTC 436
K +LM E +G + I G FKK D C
Sbjct: 75 KNRLLMNCTEFDDHGNVRVISGDFKKMDLC 104
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 355 YVDEKERNKILWNQKKH*RS----F*KR*HMSHHRGRHNIWLKHTGNSQRFEKMK 507
+ DE++ K + +++ RS F R H H R I +HT R +KM+
Sbjct: 247 FQDERDLKKYVRTSRQYSRSPSPDFRTRNHQFHSRDSQPITQRHTDIESRLQKMQ 301
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 517 VTSPSFFQIFDCFQYA*ARCYDVLDDETCVIFFKMTFNAFFGSIR 383
V+SP F+ FDC + ++VLD ++ I K + FF +R
Sbjct: 350 VSSPLSFEDFDCLESNIEFSFNVLDPDSRQILLK-SMQDFFIRLR 393
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 366 EGKKQNLMEPKKALKVILKKMTHVSSS 446
+G NL++ K+LK K ++ +SSS
Sbjct: 153 KGNNNNLLKENKSLKTTAKDLSDISSS 179
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 128 IVLKLDLLVYLNPSLLQQATNSQREIK 48
IVL DLL NP+LLQ+ ++ +I+
Sbjct: 1531 IVLLFDLLQQFNPALLQEIRLAELKIE 1557
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 92 PSLLQQATNSQREIKKRKKNHSKN 21
P ++ AT SQRE+++ +K +KN
Sbjct: 590 PIAIRVATASQRELEQTEKRKAKN 613
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 319 HCYTTKYTSEKTYVDEKERNKI 384
HCY ++Y ++K + +K N+I
Sbjct: 16 HCYPSEYLAKKVTIHDKIINRI 37
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 146 KFGDFTTKTGIKTPAYFDLRVIVSYPDI 229
KFGDF + TG D+ + +S P I
Sbjct: 1198 KFGDFVSWTGRNIECIEDIGLFISSPTI 1225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,541
Number of Sequences: 5004
Number of extensions: 44986
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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