Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15j10
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867... 127 5e-30
06_01_1116 + 9197761-9199956 30 1.3
05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860... 29 1.8
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 4.1
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 27 9.5
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 27 9.5
>01_07_0191 +
41885121-41885909,41886152-41886190,41886701-41886784,
41887331-41887413,41887501-41887588,41887736-41887990,
41888275-41888403
Length = 488
Score = 127 bits (307), Expect = 5e-30
Identities = 60/133 (45%), Positives = 91/133 (68%)
Frame = +2
Query: 104 LEDLALKLFSIDAVKFGDFTTKTGIKTPAYFDLRVIVSYPDIMELTSNMLYDLAVKDSQF 283
+E L L+L +I+AVKFG F K+GI +P Y DLR++V++P ++ +++L L +
Sbjct: 6 MESLILELHAIEAVKFGAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLPAT-RPY 64
Query: 284 DHLCGVPYTALPIATLLSIQAKKPMLMRRKETKSYGTKKSIEGHFKKDDTCLIIEDVITS 463
D LCGVPYTALPIA++LS A PML+RR + + ++G F+ D LI+ED++T+
Sbjct: 65 DLLCGVPYTALPIASVLSAAASVPMLLRRYHVTPHAAAECLDGSFRAGDAVLIVEDLVTT 124
Query: 464 GSSILETVKDLKK 502
GSS+LETV L++
Sbjct: 125 GSSVLETVAPLRE 137
>06_01_1116 + 9197761-9199956
Length = 731
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 295 WSSIYCLAHCYTTKYTSEKTYVDEKERNKILWNQKKH 405
+S+I C ++ YT E ++ E ERNK NQ+ H
Sbjct: 602 FSAIMCFSYILLVYYTEEWSWPMENERNKEKCNQEFH 638
>05_06_0208 +
26385379-26385485,26385819-26385965,26385994-26386035,
26386231-26386275,26386375-26386544,26386779-26386864,
26386953-26387060,26387680-26387809,26388144-26388231,
26388511-26388555,26388639-26388808,26388931-26389016,
26389115-26389222,26389332-26389381,26389521-26389725
Length = 528
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 101 KLEDLALKLF-SIDAVKFGDFTTKTGIKTPAYFDLRVIVSYPDI 229
K+ L + F S+ +K+ DF +K P YFD RV V YP++
Sbjct: 115 KILSLCVSYFTSVYVMKWKDFFPNKELKEPPYFDGRV-VCYPNL 157
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 335 SIQAKKPMLMRRKETKSYGTKKSIEGHFKKDDTCLIIEDVITSGSSILETVKDLKK 502
++ AK+ +L+ +E + K E H + D+ +ED S+ T+K L++
Sbjct: 1497 NVGAKESLLLTEREQNASTLKLLAEAHLEIDELIRKLEDSDRKSDSLQSTIKRLEE 1552
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 317 PIATLLSIQAKKPMLMRRKETKSYGTKKSIEGHFKKD 427
P+ L + +KKP R TK G +EGH K D
Sbjct: 628 PLVALPPLSSKKP----RSSTKLGGYSSRLEGHLKSD 660
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 247 IRGKLHDVGITNNNPQIKIGRCFDAGLSSKISKFHGINRK 128
+ G +H G N N Q+ +G D+ L KI F G+ K
Sbjct: 146 VAGHVHSWG-RNQNGQLGLGNTEDSLLPQKIQAFEGVRVK 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,945
Number of Sequences: 37544
Number of extensions: 254307
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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