Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15j10
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 200 LRVIVSYPDI-MELTSNMLYDLAVKDSQFDHLCGVPY 307
           ++VI  +  I  +  S+   D A+K  +FDH    P+
Sbjct: 37  MKVIYEWKHIDFDFGSDERRDAAIKSGEFDHTKNYPF 73


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/68 (19%), Positives = 30/68 (44%)
 Frame = +2

Query: 224  DIMELTSNMLYDLAVKDSQFDHLCGVPYTALPIATLLSIQAKKPMLMRRKETKSYGTKKS 403
            D+++  ++ +YD+ V +    ++CG    A  +   L    +    M  K+ ++Y     
Sbjct: 1049 DLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLR 1108

Query: 404  IEGHFKKD 427
             E  + +D
Sbjct: 1109 DENRYHED 1116


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 292 VWSSIYCLAHCYTTKY 339
           V   IYC  +CY  K+
Sbjct: 207 VMLGIYCRLYCYAQKH 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,073
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)