Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15j04
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.54 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.94 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   5.0  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   5.0  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   5.0  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   8.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   8.8  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  CHIWFDTPAPFFSRYHTQTQ 136
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 259
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 301
           H QK + P     P++QNT      H THP   +   SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 319 TVESQTRAGDEIASFLRYC 263
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 401 NFIIQYLSVFD--FLFARTPSVGMLFLFF 481
           +FI ++ S+     LFA T SVG LF+FF
Sbjct: 226 SFINRHPSILKDMLLFACTGSVGQLFIFF 254


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 399 ITLSFNICLCLIF 437
           IT+  N+CLCL F
Sbjct: 42  ITIGLNVCLCLFF 54


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 116 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 211
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 249 CLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 151
           CLA +  +F       + GSWIF   ++ PGG+
Sbjct: 354 CLASSREIFAFARDKGLPGSWIF--RKLTPGGI 384


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 122 HTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTV 268
           H     + ++   G   H+ KI  P + +PP   + L +     THPT+
Sbjct: 578 HLSAYAISIRMKDGQIRHLAKIISPCVLRPP---DDLNIIPVEDTHPTL 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,312
Number of Sequences: 5004
Number of extensions: 37563
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)