Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15i16
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.80 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 217 LDVLTMLVFQMGRWSLMCTLYRLYRLS 137
           + VLT++ F M R+  +C   R+Y +S
Sbjct: 127 VSVLTIVAFSMERYLAICHPLRVYTIS 153


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 517 STPLVHRALTSCLHLTLLP*HH 582
           STPL H +  + + +   P HH
Sbjct: 445 STPLAHSSYPAAIQIGHTPHHH 466


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 417 MLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMN 307
           +L K      +K I + Y+N    G +  +S F+L+N
Sbjct: 50  ILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLN 86


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 381 IIVKMYQNLDHFGNFQCKSIFILM 310
           ++ K+Y N       +C ++F+LM
Sbjct: 685 VLYKIYLNTMESHEVRCTAVFLLM 708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,681
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)