Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15i13
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.34 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   1.4  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    24   3.2  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 118 LVTNIEFRILIFLYHKQFSILNNN 47
           L+T ++++IL+  YHK  S   NN
Sbjct: 352 LITWLKYKILLIYYHKSSSTYKNN 375


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 43 CNYCLKLKIVCDKGR 87
          C YC + KI CDK R
Sbjct: 26 CLYCRRRKIKCDKNR 40


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 107 YRISNFNLPLSQTIF 63
           Y I NFN PLSQ  F
Sbjct: 198 YSIPNFNSPLSQKTF 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,624
Number of Sequences: 5004
Number of extensions: 5343
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)