Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15i11
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 180 1e-46
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.48
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.0
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 2.6
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 3.4
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 4.5
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.0
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 6.0
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 180 bits (439), Expect = 1e-46
Identities = 85/161 (52%), Positives = 112/161 (69%)
Frame = +2
Query: 86 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 265
F+PL +L+N+++Q SL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 266 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 445
DAF KF K KV GFDNL AMEIDPN+ + E+ E+ + G+MQ++
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120
Query: 446 PGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFP 568
PGIDEA+++AE++K +K M F V+FDTAPTGHTLR L+FP
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFP 161
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 147 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 263
+LE E GKLRA+ VS F L S+ I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +2
Query: 392 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFP 568
++A+ + ++ + +D Y ++ L+ F V+D + GH+ L SFP
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFP 697
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 255 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 353
T+ L ++ +F++YQ +K T +W+LI++L
Sbjct: 2 TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 201 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 380
F C KF NL LI T S+ + FL Y + + L ++L QSC+ +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227
Query: 381 LKENLRL*D 407
K + L D
Sbjct: 228 TKGLMYLFD 236
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 106 VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 213
+++ +S +D + RER WEN +Q S+ E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -3
Query: 351 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 229
T G +S L NP F G E W LW + +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 511 TKVHAFY*FHHLSIAHSLINT 449
T+VHAFY + L + S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 487 FHHLSIAHSLINTRKSSNNLLHDTLVQS 404
F +L I H L NT + + ++HD + ++
Sbjct: 95 FENLEILHQLSNTPRDKDAVIHDKIEEN 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,856
Number of Sequences: 5004
Number of extensions: 38639
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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