Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15h23
         (575 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006862-1|AAP35508.1|  182|Homo sapiens core-binding factor, be...   138   1e-32
BC018509-1|AAH18509.1|  182|Homo sapiens core-binding factor, be...   138   1e-32
AF294326-1|AAG01553.1|  187|Homo sapiens core binding factor bet...   138   1e-32
L20298-1|AAA02868.1|  175|Homo sapiens transcription factor prot...   123   5e-28
AL445197-4|CAI15942.1|  166|Homo sapiens discoidin domain recept...    31   2.2  

>BT006862-1|AAP35508.1|  182|Homo sapiens core-binding factor, beta
           subunit protein.
          Length = 182

 Score =  138 bits (334), Expect = 1e-32
 Identities = 62/119 (52%), Positives = 86/119 (72%), Gaps = 8/119 (6%)
 Frame = +1

Query: 241 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 420
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  T
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query: 421 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERL 573
           GTNL L F  + +        +    D ++E GK ++ +  I+NGVCV W+GWIDL+RL
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRL 119


>BC018509-1|AAH18509.1|  182|Homo sapiens core-binding factor, beta
           subunit protein.
          Length = 182

 Score =  138 bits (334), Expect = 1e-32
 Identities = 62/119 (52%), Positives = 86/119 (72%), Gaps = 8/119 (6%)
 Frame = +1

Query: 241 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 420
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  T
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query: 421 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERL 573
           GTNL L F  + +        +    D ++E GK ++ +  I+NGVCV W+GWIDL+RL
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRL 119


>AF294326-1|AAG01553.1|  187|Homo sapiens core binding factor beta
           isoform PEBP2B protein.
          Length = 187

 Score =  138 bits (334), Expect = 1e-32
 Identities = 62/119 (52%), Positives = 86/119 (72%), Gaps = 8/119 (6%)
 Frame = +1

Query: 241 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 420
           MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  T
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query: 421 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERL 573
           GTNL L F  + +        +    D ++E GK ++ +  I+NGVCV W+GWIDL+RL
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRL 119


>L20298-1|AAA02868.1|  175|Homo sapiens transcription factor
           protein.
          Length = 175

 Score =  123 bits (296), Expect = 5e-28
 Identities = 55/112 (49%), Positives = 79/112 (70%), Gaps = 8/112 (7%)
 Frame = +1

Query: 262 QKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLV 441
           Q++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L 
Sbjct: 1   QRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQ 60

Query: 442 FDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERL 573
           F  + +        +    D ++E GK ++ +  I+NGVCV W+GWIDL+RL
Sbjct: 61  FFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRL 112


>AL445197-4|CAI15942.1|  166|Homo sapiens discoidin domain receptor
           family, member 2 protein.
          Length = 166

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 187 MLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRP 348
           + P    Y++P  R I K+P   P ++   E DD+  R+SRE   + +G  D P
Sbjct: 84  IFPLRPDYQEPS-RLIRKLPEFAPGEEESGE-DDVVGRVSREKPQQASGRYDTP 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,427,542
Number of Sequences: 237096
Number of extensions: 1684190
Number of successful extensions: 8286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8282
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)