Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15h07
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 28 0.81
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 3.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 7.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 10.0
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 10.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 10.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 10.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 10.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 10.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 10.0
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 10.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 10.0
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 10.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 10.0
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 10.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 10.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 10.0
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 28.3 bits (60), Expect = 0.81
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 304 HYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSDA 483
HY+ + YT DE R LL + ++ TIDQ+K+ L+S+
Sbjct: 3 HYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVY--TIDQVKEAYQVLSSEK 60
Query: 484 DAGEFQIFLNQE 519
D ++QI +E
Sbjct: 61 DRQQYQIKQEEE 72
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 43 ESIKKIMDDTEAFEKEQEAERLRAEQTAANALLN 144
E K DD+E EKE E ER + A A+ +
Sbjct: 385 EPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 157 TSADDVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNA 336
TSAD V ++ A +A + P PGS+ + + T P T EH K A
Sbjct: 547 TSADTVESKHAAGSGSATTIPSPGSATTK--PTPGSATTKPTPVSATEEHAAGTTKPAPA 604
Query: 337 A 339
A
Sbjct: 605 A 605
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 469 LNSDADAGEFQIFLNQEDCVMLKNL 543
LNS+ DAG F F N+ D K +
Sbjct: 528 LNSEIDAGYFDDFTNENDMSKYKEV 552
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 192 GVGTINNIVCGRLRSPVQKSVCGSLFGP 109
G GT+ V G L SPV K+ S+F P
Sbjct: 120 GTGTMGPAV-GELTSPVMKNRAESIFSP 146
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 486 CWRISNIFKPGRLCDAEKFVKFS 554
CW I+++ K L +AEK +K++
Sbjct: 567 CWHITDVGKTLDLGEAEKLLKYN 589
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 64 DDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADAN 195
D EKE+ AER R Q A + L + ++ D +D+N
Sbjct: 36 DKAPIHEKEEAAERFRGVQEAYDILKDPESREMYDMYGMNSDSN 79
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 YRRTLHRSGQGLQRGVHCRRVQFPGQD-GSFAFNRKSAGHSNESVAHNNY 440
+ +T+ R+G G Q + R G++ F NR+ H+ VAH+N+
Sbjct: 565 FLKTIKRTGLG-QFAFYEIRYDADGKEIPDFVLNREPYRHATVLVAHDNF 613
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 229 SSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYTADEYNS 363
+S P+ + SD+ E T+ + D +YN DE+ S
Sbjct: 43 NSEPQTVASQEISDSQEEDTTLTSSQFEDCGTEYNEVVEDDEFRS 87
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 130 LRQFVRPSIFPLPVLFRTL 74
L ++V+P+I+PLP++ + L
Sbjct: 471 LNKYVKPNIYPLPLIEQLL 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,113
Number of Sequences: 5004
Number of extensions: 35555
Number of successful extensions: 107
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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