Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15h07
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 34 0.067
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 33 0.15
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 1.4
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 29 2.5
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 29 3.3
05_01_0146 - 953957-956278,956468-956786,957185-957213 28 4.4
03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517 28 4.4
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 5.8
10_08_0995 - 22109824-22110104,22110865-22110986,22111204-22111298 27 7.7
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 27 7.7
04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556 27 7.7
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 358 CTRRQCTPRCSPCPDRCNVRRYVGRVPCTCP 266
C RR C C+PCP+ C+ R G C P
Sbjct: 427 CRRRCCEGDCAPCPEVCDKRLRCGNHKCLSP 457
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 33.1 bits (72), Expect = 0.15
Identities = 26/100 (26%), Positives = 41/100 (41%)
Frame = +1
Query: 19 VKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANI 198
V+ID + S+ + D E E EA+ AE+ A L A DD++ N
Sbjct: 226 VEIDDDYNSSLGEEPKDDEHTIDEDEAQITEAERNEELAALQAEADLPLDDILKLYTKNK 285
Query: 199 STAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQ 318
AFS S R ++ S+S ++ + A D+
Sbjct: 286 VQAFSVSRESSPDGRDVFSDSDSKDLIKDPLNQANGCNDE 325
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 259 SESDTYMEPARHTAEHYTDQDKD 327
S+SD+YM+ A T+ Y QDKD
Sbjct: 2049 SDSDSYMDDAASTSGQYDQQDKD 2071
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 166 DDVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYT 345
D+ +N ADA P+P + ++ + E D R + + + D+D DY T
Sbjct: 116 DNKINLADAKAICLMECPMPAADGLNFVCDYPEGD-----IRLSVDDWIDRDYDYFEFLT 170
Query: 346 ADEYNS 363
D NS
Sbjct: 171 PDMRNS 176
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -2
Query: 376 PS*PGNCTRRQ-CTPRCSPCPDRCNVRRYVGRVPCTCP 266
P PG CT C P CPD + G C+CP
Sbjct: 300 PYLPGGCTDIDVCAPGNDGCPDGMICSNFPGGHNCSCP 337
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = +1
Query: 19 VKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRAD 189
VKI+ L +E++K I + E ++E++ +R + TAA + + +A+ + + +++ D
Sbjct: 471 VKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEESDKAKEAHERYLSKED 527
>03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517
Length = 318
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +1
Query: 226 GSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKAL 405
G P + S D + R+T Y N T + S +R VLL +IEKA
Sbjct: 44 GQKDPEVVLLSKFEDDHYNRVRYTLASYI-----INENSTGEVKFSPMRRVLLEMIEKAF 98
Query: 406 ATLTNRLHITT 438
+T+ H T
Sbjct: 99 STINLETHTGT 109
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 346 QCTPRCSPCPDRCNVRRYVGRVPCTCPI 263
+C SPCP R G C+CP+
Sbjct: 1414 ECEQNQSPCPKGATCRNTEGWYHCSCPV 1441
>10_08_0995 - 22109824-22110104,22110865-22110986,22111204-22111298
Length = 165
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 88 EQEAERLRAEQTAANALLNRRAQTSADDVV---NRADANISTAFSDPLPGSSAPRYMYES 258
E+EA+ LR ++ RA+ D V DA + A +PL P++ +E
Sbjct: 2 EREAQGLRRRRSMGGRF---RAEIQIDPGVAIPRGPDAGFAAAVREPLVKLQRPKFEFEQ 58
Query: 259 SESDTYMEPARHTAEHYTDQDKDYNAAYTAD 351
+ D P + +D D A + AD
Sbjct: 59 WDWDYISWPHDRLDANLQMRDSDPEATFEAD 89
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 27.5 bits (58), Expect = 7.7
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Frame = +1
Query: 64 DDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSDPLPGSSAPR 243
+D+E +K +++ + R + + R+ Q S DD R + +S G PR
Sbjct: 280 EDSED-DKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVS--------GDDEPR 330
Query: 244 YM-YESSESDTYMEPARHTAE-----HYTDQDKDYNAAYTADEYNS 363
E + D Y R A+ HYT D YT ++NS
Sbjct: 331 RRRQEMPKHDEYSRRGRSDADDRRGRHYTPSDDRRGRHYTPSDHNS 376
>04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556
Length = 567
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 22 KIDRLFKESIKKIMDDTEAFEKEQEAERL 108
K DRL + +++D+++ F +EQE + L
Sbjct: 289 KFDRLVRPETCRVLDESQIFGREQELKEL 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.344
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,801
Number of Sequences: 37544
Number of extensions: 254303
Number of successful extensions: 630
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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