Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g24
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   0.85 
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.85 
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.85 
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 156 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 242
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 204 DHFGCSSNYCFNNYVCSI 257
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 396 ASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKNLR 512
           A    V+D+ +K  RVK   +R +TE  + D ++  N R
Sbjct: 248 AHPREVIDRIVKAWRVKSINIRFMTEYSSIDHEMWSNKR 286


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 339 DRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKN 506
           DRF ++   +        HA     +   +    V+C   RTVT IVN+D  K+ KN
Sbjct: 11  DRFSDTDSEHIPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKN 67


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 204 DHFGCSSNYCFNNYVCSI 257
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,970
Number of Sequences: 27780
Number of extensions: 158099
Number of successful extensions: 390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)