Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15g23
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 1.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 2.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 3.2
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 3.2
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 4.3
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 5.6
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 25 5.6
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 24 7.4
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 9.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 24 9.8
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +3
Query: 225 DGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 380
D YK +H I + V K G P L PH G+I+ I KL
Sbjct: 4 DSDYKRAEKHLSSIDNKWSSLVKKVG-PCTLTPHPEHAPYEGIIRAITSQKL 54
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 333 LITKSGVIQLIMKSKLPYAI 392
L+ K GV+ L+ K KLP+++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 196 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 306
I G Y STS +ST+ + P+ SST + S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 138 DEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLY 314
+EQ VRFV++ + L Y++ + I H D K + D + + ++K D +Y
Sbjct: 928 EEQLVRFVSRQVLYGLSYLHSKGII--HRDLKADNLLIDFDGVCKISDFGISKHSDNVY 984
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 3.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 135 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 260
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 216 HVLPVHNLHILNCW 175
HVLP+ L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 258 RHAQTSICTCRRRGHVLPVHNLHILN 181
R A T + R +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 286 LSGAWCWIWSACSNVDLYLPSTWTRIARSQFTYFKLLAMSL 164
L G WC S + +WT+ AR + F L+ L
Sbjct: 154 LFGIWCLTCFLSSFILYAYHESWTKFARERSQEFSLILFGL 194
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +1
Query: 205 GQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRATRCICTHTQCSLPNLA 351
G V S + L +P+KS + ++I W TQ PN A
Sbjct: 267 GDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDDDTPTLNFTQKKKPNPA 315
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -3
Query: 289 TLSGAWCWIWSACSNVDLYLPSTWTRIAR 203
TL G WC++ + Y TWT+ +
Sbjct: 111 TLFGFWCFVCTLALIFLTYFYETWTKAVK 139
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 213 VLPVHNLHILNCWRCPW 163
VLPV+ +L C C W
Sbjct: 38 VLPVYTSKVLRCSHCGW 54
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 202 NGQYVSTSTASTNRRLSMPTKSSTMLQIAW 291
N + + + N LS TKSS + +AW
Sbjct: 424 NAHNIDSDEDAVNESLSHSTKSSIIQSLAW 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,864
Number of Sequences: 5004
Number of extensions: 31357
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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