Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g20
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.29 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.90 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 96  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 221
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 202 INTTASQTAASLLINDITPNKTESLKIL 285
           IN   SQT   LLI++I P+ + +L +L
Sbjct: 271 INILLSQTMFFLLISEIIPSTSLALPLL 298


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 375 VDRFDSIQLNFGLVGXHRFQQIARSDRLSRQN 280
           +DR D++     +    R  +I R DR+ R N
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTN 529


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 327 HRFQQIARSDRLSRQN 280
           +RFQ+IA S + +R+N
Sbjct: 316 NRFQKIAESMKTAREN 331


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 327 HRFQQIARSDRLSRQN 280
           +RFQ+IA S + +R+N
Sbjct: 316 NRFQKIAESMKTAREN 331


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 265 TESLKILSTQSVGARNLLEPM 327
           TESL+++ T +  AR L EP+
Sbjct: 386 TESLRLIPTTTCIARILDEPI 406


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 327 HRFQQIARSDRLSRQN 280
           +RFQ+IA S + +R+N
Sbjct: 255 NRFQKIAESMKTAREN 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,069
Number of Sequences: 438
Number of extensions: 2216
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)