Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15g19
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 83 2e-17
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 7e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 42 7e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 2e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 3e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.004
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.006
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.009
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.015
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.015
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 34 0.015
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.020
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.046
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 31 0.080
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.14
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.24
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.24
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.32
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.42
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.7
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 2.3
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.0
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 4.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 5.2
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 5.2
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 6.9
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 6.9
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 9.1
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 83.0 bits (196), Expect = 2e-17
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = +3
Query: 360 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
P +SVEG+I+ V+ VH EA EE +++ F++FG +KN+HLNLDRRTG++KGYAL+E
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIE 57
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 7e-05
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
LF+ N+ E+D+++ F FG+++ +H+ +D++T KG+A ++
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.5 bits (93), Expect = 7e-05
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
L V+N+ ++ +EE++++ F FG I+ ++L D+ TG KG+A V
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFV 248
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +3
Query: 345 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
+G G Q S +FV N+ A E+D+ F G+I++I L D ++G LKG+ V
Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 351 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
T Q S E +FV + ++ + +F E+G I + +D ++G KGY V+
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVD 310
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
+++ N+ + E+DI FSEFGE +I+L D+ TG KG+A ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 384 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
ILFV N+ E + D++ F + G+I+ + L TG KG+ V+
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 384 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
+LFV ++ Q+ED++ FS FG+I + + D+ TG YA +E
Sbjct: 245 VLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIE 291
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
+F+S + + +E DI+ +F+ +G I+ I + ++ TG GYA V
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFV 146
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
+FV V + EE+ +N F++FG + + L +D+ TG +G+ V
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.1 bits (77), Expect = 0.006
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 384 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
+L+V + E+ ++ FS+FG + + ++ +R+TG K YA +E
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIE 152
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.009
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
L VSN+H +ED++ F FG+I+ +HL D + KG+ ++
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQ 386
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.9 bits (74), Expect = 0.015
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
LFV N+ + +++D+ N FS+ G IK+ + + TG +GY V
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFV 51
Score = 30.7 bits (66), Expect = 0.14
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Frame = +3
Query: 153 MADVLDIENSEEFEVDEDGE---QGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYD 323
+ D E ++EF DE + + E + G G E G S E N D
Sbjct: 194 LKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSN---VD 250
Query: 324 SLAPEGDSGTPGPQ-----RSVEGW--ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 482
+ GDS + R EG +FV N+ E E+++ N F +FG + L
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 483 DRRT 494
D T
Sbjct: 311 DPAT 314
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
+FV N+ EA+EE + F + G I + + D +T KG+A ++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 336 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 506
E D P V LF+ + +E +++ F FG ++++ LN + R GFLK
Sbjct: 391 ERDPTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.5 bits (73), Expect = 0.020
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 375 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
+G LF+ N+ +E +E ++ +FS FG I + + D + G KG+ V
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFV 409
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.046
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
LFVS + QE+++Q FS+FG + ++ + + T +G+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.5 bits (68), Expect = 0.080
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 524
++V N+ EE I FS+ GEI+ I + +DR T G+ VE
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVE 79
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
+FVSN+ E ++ F FGE+ ++ L L+ TG G +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 351 TPGPQRSVEGWILFVSNVHEE--AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
TP +++ LFV N+ + + ++ FS+FG IK+ L T KGY V
Sbjct: 409 TPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFV 467
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 350 TAVAFRS*TVVSSAVTPFCSTASTGFVAKTTTFSLTCLLLKSSDS 216
T+V+ T+ +S T +T T F TTT T L+ +SDS
Sbjct: 380 TSVSDEPTTITASGATSVTTTTKTDFDTVTTTIVSTSTLISASDS 424
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.5 bits (63), Expect = 0.32
Identities = 29/96 (30%), Positives = 42/96 (43%)
Frame = +3
Query: 174 ENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 353
EN + EDGE G A LK + F ++ +A ER + R S P
Sbjct: 11 ENVRKVNYYEDGESG-AILKTCCIE-----FESQDAARNALERQSTQRLISGNPISLDVV 64
Query: 354 PGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 461
P Q+ ++LF+SN+ E E DI+ F + I
Sbjct: 65 PEWQKP-SYYMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 506
+FV + E+D+Q F FG I NI + + GF++
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQ 338
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 169 ISKIQKNLKSTKMVNRESLDLRRRHVSEKVVVLATKPVEAVLQNGV 306
+S++ K +S + L ++R VS + L + PV+ +L+NG+
Sbjct: 30 VSELNKQKRSPGQTVSKRLHKKQRVVSNPDLSLPSSPVKQILRNGL 75
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 324 SLAPEG--DSGTPGPQ-RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 494
S+ P G + P PQ +FV + + EE+++ F FGEI + + +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGC 340
Query: 495 GFLK 506
GF++
Sbjct: 341 GFVQ 344
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
LFV N+ + +E + FSE+ + + DR G +G+ V
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFV 75
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 285 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFG 455
G + NR L+ + D +P PQ+ G+ VSN+ +E ++ + + S FG
Sbjct: 4 GGSGSITNRSTLKPLSVD-DLRSPSPQKEYRGFRTSVSNIPQE--KKFVPSHLSHFG 57
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 402 VHEEAQEEDIQNQFSEFGE 458
+ EE +E+DI+N+ S F E
Sbjct: 72 IEEEEEEDDIENEASSFSE 90
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 150 NMADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEA 278
N D L ++ ++ +DE+ + + K+K +K K + G+EA
Sbjct: 124 NAFDAL-ADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEA 165
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 400 MYMKKHKKKIYRINFPSLVR*RIFT 474
+Y+K+ +K ++ +NF ++V+ IFT
Sbjct: 476 IYLKQERKVLFSLNFLNIVQGGIFT 500
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 168 DIENSEEFEVDEDGEQGIARLKEKA-RKRKGRGFGNEAGGGSA 293
+I SE+ D++ E +LK+K RK K GN+A G A
Sbjct: 357 EINPSEQEFSDDEAEVAAKQLKKKRKRKAKSMVSGNQALPGEA 399
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 393 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDR 488
V N+H + E+D+ + F F I+ I +N DR
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDR 119
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 360 PQRSVEGWILFVSNVHEEAQ--EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 521
P ++ L+V N+ + + +++ FS FG I + L +G KGY V
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 81 KYIFINYILFKLFTTSHNVNLL*NMADVLDIENSEEFEVDEDGEQGIARLKEKARKRK 254
KY ++L + TTS +V + D D + EEF V +GI +L E K K
Sbjct: 991 KYWRARFVLLPMSTTSTHVFQKYQLLDHADALSDEEFRV-----EGIYKLSELLYKGK 1043
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/39 (23%), Positives = 24/39 (61%)
Frame = +3
Query: 387 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 503
++ S++ + E+++ ++GEI++I +R +GF+
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFV 540
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 228 LKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 365
+ + R+ + E GGGSA GN G +SG PQ
Sbjct: 358 MADSTADREYQSLMQELGGGSAISNGN-GEPQKSIEFSESGAASPQ 402
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 219 IARLKEKARKRKGRGFG 269
I R+K + +R+GRGFG
Sbjct: 245 IRRIKLRGEQRRGRGFG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,565
Number of Sequences: 5004
Number of extensions: 31418
Number of successful extensions: 162
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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