Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g17
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    31   0.15 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    28   1.0  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   2.4  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.2  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   5.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   5.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   5.5  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   7.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   9.6  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   9.6  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 129 G*SVNIKMEENTVAVEKVVKQKSFLKNKFLFCITIVSIATLVGYIHYRYVSHL 287
           G S N     NT+  EK++ + +F+++ F+  +TI+    L G  + RY+  L
Sbjct: 5   GFSTNGSGSLNTIVCEKLLFKPNFVQDSFIIGMTILCSVILYGSGNLRYIDAL 57


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 165 VAVEKVVKQKSFLKNKFLFCITIVSI 242
           + V + VKQK FL++K +FC+ I S+
Sbjct: 305 LCVVQQVKQKVFLQSKQIFCVPINSL 330


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 354 MGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVN 464
           +GF Y Y KTLV+   F  G       ++V  PKE N
Sbjct: 28  LGFLYKYQKTLVYPSAFPQGSR-----ENVPTPKEFN 59


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 529 TSKYRYNAAINTSGCILNRLNAFTSFGCSTLLS--NINLDIPATNGFSWTSVL 377
           TS YR N      GC +N  N   +   +TL+   N N D P    FS+  +L
Sbjct: 486 TSNYRKNVLHLVVGCGINVSNLGPTVSLNTLVDEWNKNSDNPRLEKFSFEKLL 538


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 228 TIVSIATL-VGYIHYRYVSHLFENDRNFAYLSELEREMSF 344
           T+V++ T+ V Y H+  +S      +N  YLS    EMS+
Sbjct: 681 TLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSY 720


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 310 HTSLSWRGRCHSV 348
           HT+L WR RC SV
Sbjct: 34  HTTLIWRNRCESV 46


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 98  YSHINKSLILYYCIKMTLILNLLSFLGDI 12
           + H+NKSLI   C+      N LSFL DI
Sbjct: 274 FEHLNKSLITTLCLN-----NYLSFLMDI 297


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 23/112 (20%), Positives = 46/112 (41%)
 Frame = +3

Query: 153 EENTVAVEKVVKQKSFLKNKFLFCITIVSIATLVGYIHYRYVSHLFENDRNFAYLSELER 332
           +E    +E+  +  +FL   F+  +    ++ + G + Y +   LF   RNF  L+  +R
Sbjct: 299 KEEKTELEESTRPSNFLSTYFVSPL----VSAIDGTVDYLHGKSLFPEKRNFKELTMRKR 354

Query: 333 EMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIH 488
            +    +    Y Y    + E    + +S+    KS  +   +  F+ F  H
Sbjct: 355 SIVTPEDSEEVYPY----ISEFVAASNVSEEKGPKSFANLAFITIFSHFFYH 402


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 189 QKSFLKNKFLFCITIVSIATLVGYIHYRYVS-HLFENDRNFAYLSELEREM 338
           +KS+ + +  F +  +S      Y+H+RY S H    DR  AY+  LE+E+
Sbjct: 30  RKSYPEKQISFDVVTLSEPHKEEYVHWRYSSAHEGIPDRR-AYVIVLEKEV 79


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 315 LSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEV 461
           LS++ R  +    +GFY   +  +VH++  +  I K + D + +  K V
Sbjct: 372 LSDIVRLYNVIEILGFYREAFSKIVHDECIILRIIKTLEDFTYQRMKTV 420


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 536 EPNIKVSVQCCNQYLRM 486
           +PN +V V C N YL M
Sbjct: 171 DPNTRVEVWCSNDYLNM 187


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 99  NIFYSLI---MYCG*SVNIKMEENTVAVEKVVKQKSFLKNKFLFCITI 233
           NIF S++   ++CG  VNI+   N   V   + +   L N FL   T+
Sbjct: 393 NIFLSIVQALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCFLNSSTV 440


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 387 VHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAAL 512
           VHE   +   SKL+ D   ++P   NA     I+  VL + L
Sbjct: 233 VHEDADMELASKLVLDGKTDYPAACNAIETLLINEAVLSSHL 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,592
Number of Sequences: 5004
Number of extensions: 43087
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)