Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15g17
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827 33 0.15
02_05_0900 + 32616049-32616135,32616593-32616695,32616925-326170... 30 1.0
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 28 4.2
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249... 28 5.6
07_03_0458 + 18406844-18408877 28 5.6
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 27 7.4
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 27 9.8
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 27 9.8
>05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827
Length = 137
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 144 IKMEENTVAVEKVVKQKSFLKNKFLFCITIVSIATLVGYIHYRYVSHLFENDRNFAYLSE 323
++ N + + ++KQ S L+ C + L+G++HYR+V E D Y+ E
Sbjct: 30 VRQSSNAITTQNIMKQDSRLEFTHEAC----NEDRLIGFVHYRFV---LEEDVPVVYVYE 82
Query: 324 LEREMS 341
L+ E S
Sbjct: 83 LQMESS 88
>02_05_0900 +
32616049-32616135,32616593-32616695,32616925-32617004,
32617118-32617447,32617623-32617735,32617861-32617903,
32617968-32618045,32618328-32618339
Length = 281
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 144 IKMEENTVAVEKVVKQKSFLKNKFLFCITIVSIATLVGYIHYRYVSHLFENDRNFAYLSE 323
++ N + + ++KQ S L+ C + L+G++HYR+V E D Y+ E
Sbjct: 122 VRQSSNAITTQNIMKQDSGLEFTHEAC----NEDRLIGFVHYRFV---LEEDVPVVYVYE 174
Query: 324 LE 329
L+
Sbjct: 175 LQ 176
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 487 CILNRLNAFTSFGCSTLLSNINLDIPATNGFSW 389
C+L RL+ T FGC+T L I + P + F +
Sbjct: 248 CVLQRLSKLTVFGCTT-LQVIEIKAPNLSTFDY 279
>10_01_0238 +
2496974-2497618,2497738-2497980,2498202-2499211,
2499329-2499370,2499465-2499492
Length = 655
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 291 ENDRNFAYLSE-----LEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPK 455
+N+ N Y +E + S + G Y YK ++ + FVA + DK E K
Sbjct: 27 DNNHNITYFTEDDIKRITNNYSTKLGKGAYGEVYKGVIGDNRFVAVKKFIRVDKLDEFAK 86
Query: 456 EVNAFNRFNIHPEVL 500
EV + N H V+
Sbjct: 87 EVIVHTQVN-HKNVV 100
>07_03_0458 + 18406844-18408877
Length = 677
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = +3
Query: 267 YRYVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVE 446
Y + E +R A L E R + K ++ + F ++K D V
Sbjct: 306 YSLKRKMLEQERKIAELMEERRIAELTERRTVAFREIKAILQDIGFERLVTKEKIDSIVG 365
Query: 447 HPKEVNAFNRFNIHPEVLI 503
+PK+V+ F+ VLI
Sbjct: 366 NPKQVSTSEAFSGKSSVLI 384
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 315 LSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKL-MFDKSVEHPKE 458
+ ELE + F T+MG + + T+V++ P G L + V++ KE
Sbjct: 283 MDELETRVRFYTDMGMNDNDFGTMVYDYPKALGFFSLEEMNSKVQYLKE 331
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 455 FWMLHTL-VEHQFRYPSYKWLLMDQCFV 375
F LH+ ++H FRY S++W CFV
Sbjct: 483 FKRLHSKRLQHAFRYYSHQWRSWGACFV 510
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 510 MLQSIPQDVY*ID*MHSLLLDAP 442
+L+S+P DV +D + SL LDAP
Sbjct: 355 VLRSLPDDVGFVDDVESLFLDAP 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,076
Number of Sequences: 37544
Number of extensions: 239863
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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