Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g17
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 429 FDKSVEHPKEVNAFNRFNIHPEVLI 503
           +DK    P E+N+ N  N++ +  I
Sbjct: 23  YDKMTRPPGEINSINPINVYTKAYI 47


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 524 KVSVQCCNQYLRMYIKSIECIH 459
           +V +  C+ Y R  +KS  C H
Sbjct: 47  RVVLSACSPYFRELLKSTPCKH 68


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 417 ISQLQMASHGPVFCNKSNRNPFRY 346
           I+   + SH  ++C K  +N   Y
Sbjct: 150 ITMYDLKSHNDIYCEKYEKNGETY 173


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 333 EMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRF 479
           +M   T +GF   +  +   E     G S L+  K+ +HP  +    R+
Sbjct: 2   KMRIITALGFLLFWQNSASLENDNEFGFSYLLNCKNYDHPTTLLKLKRY 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,985
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)