Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g14
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   0.76 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   3.1  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   3.1  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 296 QSLFKALIFT-LSLIQWIKLIKYINYCIDGAEINLQTGIKMIVIFHFTFII 147
           Q LF A I   LS    +  +  +N  ++GA I L T  + I +  F FII
Sbjct: 445 QRLFSACIEVYLSYCNTLIFLHRLNESVEGANICLDTARRAINVLKFFFII 495


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 378 FSFWNFLFTIFFS---SFRIN*HLVEKVSTTVPF*SFDFY 268
           F +W F F  FFS    F I   +    S  VPF  F FY
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFY 113


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 366 NFLFTIFFSSFRIN*HLVEKVSTTVPF*SFDFYVES 259
           +F FT+F +SF I+  L+   +    F S  FY  S
Sbjct: 113 HFHFTVFINSFNIHRFLIAGFTAASKFFSDVFYTNS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,335
Number of Sequences: 5004
Number of extensions: 16426
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)