Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g13
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   3.1  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    23   4.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   5.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   5.4  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    23   7.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    22   9.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    22   9.5  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    22   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    22   9.5  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = -1

Query: 114  DSRTYNNWYSIIGNHG---TASRCVP-QIHYNAL 25
            D+R Y+NW  I+   G   T   C    +HY  L
Sbjct: 1086 DARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 81  LWNTSYYKCENHVNL 125
           LWNT Y++ E  ++L
Sbjct: 2   LWNTQYFRIEGMISL 16


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 108 RTYNNWYSIIGNHGTASRCVPQIHYNALLMNLIKK 4
           R Y+N+YS + N G  +  V  I  + +L  L  K
Sbjct: 635 RGYDNYYSFVHNRGRFATYVYFIIKDCVLRTLAHK 669


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 102 YNNWYSIIGNHGTASRCVPQIHY 34
           YN W S I  +   SRC  + H+
Sbjct: 339 YNTWISTIRCNDCNSRCDTKYHF 361


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 111 SRTYNNWYSIIGNHGTASRCVPQIHYNALLMNL 13
           S++ N  Y+I+   GT+S C  + H   L+ NL
Sbjct: 5   SKSTNKTYTIVIKLGTSSICDEKTH-EPLISNL 36


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 55  VCPANSLQRFANEFN 11
           VCPA  ++++ NEF+
Sbjct: 332 VCPATLMKQWVNEFH 346


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 105 CENHVNLFCEK 137
           CE H+N  CEK
Sbjct: 154 CEQHINRKCEK 164


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 91  PVIISARIMLIYFVKNKI 144
           PV+IS      YFVKNK+
Sbjct: 148 PVLISKGSSGSYFVKNKV 165


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 61   CGPVITNYGIPVIISA 108
            C P+I+++G P+  SA
Sbjct: 3447 CEPIISSFGFPISKSA 3462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,579
Number of Sequences: 5004
Number of extensions: 8026
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)