Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g13
         (162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   1.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    20   3.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    20   3.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    19   5.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    19   5.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    19   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 60  SRCVPQIHYNALLMNLI 10
           SRC P+IH + + +  I
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 60  SRCVPQIHYNALLMNLI 10
           SRC P+IH + + +  I
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 21  LAKRCSEFAGHTGLRSRDYQLW 86
           L  + SEF     +R + Y++W
Sbjct: 95  LTWKSSEFDSINSIRVKSYEIW 116


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 42  FAGHTGLRSRDYQLWNTSYYKCENHVNLFC 131
           F G  GL  R     N  + +C+     FC
Sbjct: 25  FGGFGGLGGRGKCPSNEIFSRCDGRCQRFC 54


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 42  FAGHTGLRSRDYQLWNTSYYKCENHVNLFC 131
           F G  GL  R     N  + +C+     FC
Sbjct: 25  FGGFGGLGGRGKCPSNEIFSRCDGRCQRFC 54


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 99  NNWYSIIGNHGTASRCVPQIHYN 31
           NN+ S I N+   +    +++YN
Sbjct: 87  NNYISNISNYNNNNNYNKKLYYN 109


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 99  NNWYSIIGNHGTASRCVPQIHYN 31
           NN+ S I N+   +    +++YN
Sbjct: 87  NNYISNISNYNNDNNYNKKLYYN 109


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 99  NNWYSIIGNHGTASRCVPQIHYN 31
           NN+ S I N+   +    +++YN
Sbjct: 325 NNYISNISNYNNNNNYNKKLYYN 347


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 46  RDTPACGPVITNYGIPVI 99
           +D   CGPV+   G+  +
Sbjct: 129 QDRLTCGPVMPQGGVQAL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,514
Number of Sequences: 438
Number of extensions: 639
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)