Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g10
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   4.3  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   5.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    24   7.6  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    24   10.0 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   10.0 

>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 259 WFNIKVFH*IACVF*YSNVSFALCFRNIC 345
           WF   +F+ I C+F  S+    +C RN C
Sbjct: 208 WFKRSIFYKIGCLFSLSSF-LKICPRNDC 235


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 105 IYTSSEQISSARWKIFPLSYISPNW*PS 22
           IYTSSE+  SA  +IF ++++     PS
Sbjct: 529 IYTSSERRVSASAEIFAMAFLEQETIPS 556


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 149 KMPKSRLRHFQDKLAYIQVPSKYH 78
           K  KS   HF+D   Y ++PS+Y+
Sbjct: 382 KWSKSHEYHFKDLENYFKLPSEYN 405


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 89  SKYHPLGGRSSLCRISLQTGDLASILII 6
           S+YH   G S L  ISL  G + ++ ++
Sbjct: 313 SQYHFTSGLSGLTYISLSIGQVFAVFVL 340


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 276 HFYVEPPPADTLESC 232
           H+YV PP   T + C
Sbjct: 213 HYYVNPPGVSTTDGC 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,785
Number of Sequences: 5004
Number of extensions: 27849
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)