Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g10
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457...    27   4.1  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    27   7.2  
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355...    27   7.2  
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    26   9.5  

>07_01_0618 +
           4577417-4577430,4577838-4577874,4578070-4578173,
           4578512-4578707,4579559-4579628,4579849-4579952,
           4580296-4580335,4581016-4581070,4581418-4581426,
           4582026-4582157,4582544-4582613,4583029-4583086,
           4583173-4583228,4583315-4583470,4583589-4583700,
           4583782-4583923,4584141-4584216,4584306-4584401,
           4584509-4584637
          Length = 551

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 185 YDGSHHRTQDI*KMPKSRLRHFQDKLAYIQVPSKY 81
           Y+GSHH + ++ ++    +R  + K  YI+  ++Y
Sbjct: 191 YEGSHHLSVELKRINSISIRFARSKRQYIEAQAEY 225


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 153  NILRSVMATIIHVASQDAQLRAFSCGH 233
            N+  ++++  I+V+S D  L  + CGH
Sbjct: 1062 NVYMALISAAINVSSVDENLNLYDCGH 1088


>04_04_0151 +
           23134467-23134627,23134657-23134803,23135413-23135512,
           23135554-23135638,23135767-23136419
          Length = 381

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 200 GRAAAGVLVRSQLSRVSAGGG 262
           G A  GV+VR+   R++AGGG
Sbjct: 77  GEAVNGVIVRADQPRLAAGGG 97


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 267 HKSVSLN-SLRVLIFKCFLCSLF*KYM 344
           HK V    ++RVL+F   LC LF  YM
Sbjct: 212 HKKVGFRGAVRVLVFTIVLCPLFLLYM 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,897
Number of Sequences: 37544
Number of extensions: 187343
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)