Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g10
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.24 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 261  PPPADTLESCDRTRTPAAARPVKLHV*W*PSQN 163
            P P     +CDR +     R ++ H  W P ++
Sbjct: 1655 PVPGSNYNTCDRIKRGTVIRSIRSHSTWDPRRH 1687


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 HNSLECLRVVVQHKSVSLNSLRV 299
           H S  C+R + +H  +  +S +V
Sbjct: 485 HKSCICVRFIAEHTKMLEDSTKV 507


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 HNSLECLRVVVQHKSVSLNSLRV 299
           H S  C+R + +H  +  +S +V
Sbjct: 485 HKSCICVRFIAEHTKMLEDSTKV 507


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 185 TCSFTGRAAAGVLVRSQ 235
           TC FT    A +LVR++
Sbjct: 189 TCDFTRDKVAPILVRAR 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,625
Number of Sequences: 438
Number of extensions: 2004
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)