Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g07
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.81 
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    28   1.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   3.3  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   3.3  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   5.7  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   7.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   10.0 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   10.0 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   10.0 
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          25   10.0 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   10.0 

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 470 TNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSS-LPTVSVFMDSSTR 294
           ++S+P+T     S S   SS S    S +S P+S    I  MS S+ + TV+V   SS+ 
Sbjct: 205 SSSVPITS--STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262

Query: 293 VLGSSEP 273
              S  P
Sbjct: 263 STSSEVP 269


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 ENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 321
           ENVI   +G  +   +    +DPN  +E +MKTL
Sbjct: 105 ENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTL 138


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 192 NHHRGDGLQRKRDYWLQGVL 251
           N H+G G+  K D W  GVL
Sbjct: 223 NVHKGFGIDEKSDIWALGVL 242


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 TVSVFMDSSTRVLGSSEPPLYAYAW 252
           T  ++M+ ++ + G+S PP Y Y +
Sbjct: 194 TTPLYMERASYLFGASNPPAYTYTY 218


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 321
           +  + T YN+   IG  GY + Y+       P+  ++ES+K L
Sbjct: 135 VRYIRTHYNDEFCIGVAGYPEGYS-------PDDDIDESIKHL 170


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 145 NLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTR 297
           N+  TP  ET+ + ++   +  D  E+ +     +   Y+Y GG L+ N R
Sbjct: 127 NIIPTPANETVPR-IKQPSIALDSLESPVSAPSRHQSTYSYKGGPLNYNLR 176


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 447 LAAAFVVAKTLFAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQ 319
           +AAA  VA ++FA  A  +  ++A   +LP   +  IF  +S+
Sbjct: 317 VAAAKTVAPSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSR 359


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 443 PRPSLSRKHSSLSLPQRSINS-SPTSHCCLIPH--MSKSSLPTVSVFMDSSTRVLGSSEP 273
           P+PS+SR+ S +  PQ    S     +  ++ H  M  S     S  + S T V+ S  P
Sbjct: 518 PQPSISRRPSVIPRPQEGSKSMEAIQNALVLVHCRMPYSINGFSSTKLYSGTGVIVSVVP 577

Query: 272 PL 267
           PL
Sbjct: 578 PL 579


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 367 CEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFA 498
           CEV   +IDR G     C  D +   Q +    + + +N +HF+
Sbjct: 41  CEVAVTVIDRKGRLHVFCSSDYQRTLQQLNTLSIYELKNRSHFS 84


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 437 PSLSRKHSSLSLPQRSIN 384
           PS+S +H+++SLP  S N
Sbjct: 418 PSISSRHTTMSLPYLSYN 435


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 358 RQQCEVGEELIDRWGSDSEECF 423
           + Q E+ EEL+D  GSD +  F
Sbjct: 46  KTQTEINEELVDLIGSDFDTSF 67


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 421 FRDNEGRGQWVKGKELVKRQN 483
           +R+N G GQW  G+ ++  +N
Sbjct: 107 YRNNRGFGQWRDGQHVIGARN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,114
Number of Sequences: 5004
Number of extensions: 43242
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)