Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g07
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0421 + 24065725-24066052,24066811-24067040                       29   2.5  
06_02_0035 + 10816723-10819497,10819964-10820011                       28   4.4  
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926...    28   5.8  
07_03_0325 - 16809700-16809774,16810262-16810316,16810467-168107...    28   5.8  
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407           28   5.8  
09_06_0072 - 20682424-20682870,20683928-20684854                       27   7.7  
07_01_0442 - 3348638-3349126,3349978-3350322                           27   7.7  
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899     27   7.7  

>03_05_0421 + 24065725-24066052,24066811-24067040
          Length = 185

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 147 LGHYPAQG-NAAKGRGNH-HRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTR 299
           +G +P+ G     GRG   HRG+ L R R    +   PG  V RR A  +  R
Sbjct: 1   MGDWPSAGARLGDGRGEAGHRGEALARARPAIRKRRRPGALVNRRRATPRFAR 53


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 153 HYPAQGNAAKGRGNHHR-GDGLQRKRDYW 236
           H   +G AA   G HHR GD + ++  YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270


>07_03_1386 -
           26192019-26192073,26192272-26192397,26192570-26192622,
           26192722-26192807,26192896-26193017,26193096-26193155,
           26193787-26193866,26193949-26194087,26194273-26194367,
           26194792-26194860,26195015-26195131,26195839-26195913,
           26196590-26196961
          Length = 482

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 160 PPKETLQKDVEITIVETDYNENVIIGYKGYYQAY 261
           PP  T + D EI  +E D+++ VIIG    ++ Y
Sbjct: 162 PPPLTNKADWEINPLELDFSKAVIIGKDDLFRCY 195


>07_03_0325 -
           16809700-16809774,16810262-16810316,16810467-16810737,
           16810944-16811079,16812261-16812353,16813019-16813063,
           16813409-16813543
          Length = 269

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +1

Query: 355 IRQQCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYH 504
           +R   E  E L   W  + ++   D      W +G   V+   NN F  H
Sbjct: 79  LRNMSEYAEYLFQSWRDEDDK--NDESSGPSWFRGHRWVRNPKNNGFRPH 126


>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
          Length = 473

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 199 IVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKT 318
           +VE  + +N+ +      + + Y+GGSL P   V+ S+++
Sbjct: 31  VVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70


>09_06_0072 - 20682424-20682870,20683928-20684854
          Length = 457

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 154 ITPPKETLQKDVEITIVETDYNENV 228
           + PP + +Q +V +T+ E+DYN  +
Sbjct: 281 LVPPNQRMQLEVFLTLPESDYNRRL 305


>07_01_0442 - 3348638-3349126,3349978-3350322
          Length = 277

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 516 LXARVVRKVIVILPFHQLFAFDPLAAAFVVAKTLFAVTAPTVD*LFAHLAL-LPDTPHEQ 340
           L    +++++ +L  HQ     PL  A  ++ +   +TA  +     HLA  LPD P + 
Sbjct: 105 LTVHFLKRILEVLFIHQYSGSMPLNTAATISSSYLVITATMI--YAQHLAAGLPDPPVDL 162

Query: 339 IF 334
           ++
Sbjct: 163 LY 164


>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
          Length = 439

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 153 HYPAQGNAAKGRGNHHRGDGLQRKRDYW--LQGVLPGVCVQRRLAGSQHTRR 302
           HY  +     G GN   G  L ++ D W  + G+  GVC    L   +  RR
Sbjct: 387 HYVGRAAVVLGVGNVFYGMSLAKEGDEWSYVYGIFVGVCAVAYLVLEEWRRR 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,326
Number of Sequences: 37544
Number of extensions: 318289
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)