Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g05
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.36 
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   1.5  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   4.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.9  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   SQHDYDRDQIKRELNSLRRNVHDMCTR-SGTSFDCNKFLRSDDMTPV 138
           S+ D D ++++ +L +L      +  R S ++FD +KF+R++D   V
Sbjct: 450 SERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKFIRTEDKDTV 496


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 118 SDDMTPVVTTITPKRTADYKIT-EYVSDVKTIKPSNRPLVESGPLVQEAAKYGRCTV*RV 294
           SD   P + T++    A   +  E   ++K I PSN+P  +  PL++  A     TV + 
Sbjct: 396 SDANNPTIGTVSGLEAAMQDVLKEKKQEMKNIDPSNQPSDQFIPLLKTCALCNLSTVNQT 455

Query: 295 ES 300
           E+
Sbjct: 456 ET 457


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 85  GTSFDCNKFLRSDDMTPVVTTITPKRTADYKIT 183
           G +FD  K + S+++  V+  I P+ T  YK++
Sbjct: 395 GCNFDLYKKIVSNNVESVLVEIIPRLTEKYKVS 427


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 329  KATYLIDPDDFIDKLTLTPYTVFYNGGVLVKISGLRLYMLLTA 457
            KA   IDPD+F   +  T    F+     +K+  ++LY +  A
Sbjct: 2124 KANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEA 2166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,237
Number of Sequences: 5004
Number of extensions: 41857
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)