Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g03
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435...    29   2.1  
12_01_0082 - 662016-663215                                             29   2.8  
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    29   3.7  
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    29   3.7  
02_02_0707 + 13144147-13144788,13145115-13148663                       28   4.9  
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913...    27   8.5  

>05_05_0080 -
           22243175-22243226,22243342-22243389,22243485-22243540,
           22243752-22243819,22244712-22244773,22245166-22245214,
           22245818-22245899,22245987-22246064,22246441-22246499,
           22246727-22246805,22246946-22247218
          Length = 301

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 261 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 440
           A   S+  P+  ++  G     +  QP+ YLN   +  P+G   +V D   A     +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234

Query: 441 VNSLTD 458
           ++ L +
Sbjct: 235 IDLLVE 240


>12_01_0082 - 662016-663215
          Length = 399

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 128 RHYIFLDVQHVTAGSYHVALLVINHLYYPARKQA 27
           R ++ L V++  +G Y +  +  NHL+YP+ + A
Sbjct: 3   RRFLNLVVENARSGLYSLRRIPANHLFYPSTRAA 36


>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 231 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 386
           +TT T     +S  S+P+P +A+ D+G S  C    P D   Y+     DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349


>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/94 (25%), Positives = 46/94 (48%)
 Frame = +3

Query: 111 QENIMTSNCASSPYSCEATSACAEAQQLQVDIGGDTIVNNQTTMTQINFNASYTSAPTPS 290
           +ENI      S+ +  E+  + AE +Q     G   +V+     T+    ASY  + TP+
Sbjct: 192 KENINQETSTSNQHEYESNPSDAEPKQKGTPEG--LLVS-----TEGGDQASYVKSSTPT 244

Query: 291 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADT 392
            +SFD+   +  ++   +D+   +++ T D +DT
Sbjct: 245 TSSFDSELQKGGNRLDSSDHRGNFSS-TTDRSDT 277


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +3

Query: 375 PDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG---EAVSSAYYSESLE 545
           PD   TVV+D +TA + N   S   + +      CL  + D +G     V     SE   
Sbjct: 203 PDVDATVVADGQTACSKNQGLSDGEIGNGKSDFVCLNSSGDEVGGGFGVVQDQAMSELFG 262

Query: 546 LPCCGATIAQF 578
           +PC    I QF
Sbjct: 263 VPCM-VEILQF 272


>10_08_0198 +
           15688142-15690427,15690524-15690607,15691232-15691336,
           15691420-15691528,15693037-15693188,15693278-15693583
          Length = 1013

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
 Frame = +2

Query: 203 HW---RRHDREQPNDYD 244
           HW   +RHD ++PNDYD
Sbjct: 320 HWGSRQRHDSKEPNDYD 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,142
Number of Sequences: 37544
Number of extensions: 288550
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)