Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15g02
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    27   1.3  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        27   1.3  
Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.      25   7.2  

>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 47  PTYSEPEKTTLIKRILRIYLYCIKINTN*T*PYSVGFYKKK 169
           P+  E  K  +IK I ++ L  I++ +N   P  +GFY+K+
Sbjct: 337 PSVYEDRKKAVIKSIKKV-LQFIRVRSNSFEPTFIGFYRKE 376


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 47  PTYSEPEKTTLIKRILRIYLYCIKINTN*T*PYSVGFYKKK 169
           P+  E  K  +IK I ++ L  I++ +N   P  +GFY+K+
Sbjct: 337 PSVYEDRKKAVIKSIKKV-LQFIRVRSNSFEPTFIGFYRKE 376


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 47  PTYSEPEKTTLIKRILRIYLYCIKINTN*T*PYSVGFYKKK 169
           P+  E  K  +IK I ++ L  I++ +N   P  +GFY+K+
Sbjct: 337 PSVYEDRKKAVIKSIKKV-LQFIRVRSNSFEPTFIGFYRKE 376


>Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical
           protein C15A11.3 protein.
          Length = 594

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 31  KNLQAAYIF*ARKDHVN*AHFTYLSL 108
           +NL   YIF  R D V   HF Y  +
Sbjct: 460 RNLYCEYIFHGRNDQVVHIHFEYFDI 485


>AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.
          Length = 594

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 31  KNLQAAYIF*ARKDHVN*AHFTYLSL 108
           +NL   YIF  R D V   HF Y  +
Sbjct: 460 RNLYCEYIFHGRNDQVVHIHFEYFDI 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,453
Number of Sequences: 27780
Number of extensions: 43827
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)