Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15f18
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna... 29 1.2
Z70754-8|CAE17845.1| 188|Caenorhabditis elegans Hypothetical pr... 27 4.7
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 26 6.1
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 26 6.1
Z99710-4|CAB16865.1| 660|Caenorhabditis elegans Hypothetical pr... 26 8.1
AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H... 26 8.1
AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchang... 26 8.1
AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchang... 26 8.1
>U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna
synthetase protein2 protein.
Length = 512
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 159 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 281
E+F ++E F K V NW+ND +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171
>Z70754-8|CAE17845.1| 188|Caenorhabditis elegans Hypothetical
protein F58E6.11 protein.
Length = 188
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 247 KLSFSQLTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTW 68
K+ +SQ+ T T +L S + + S L LL DS+ F +LY+ + NT
Sbjct: 31 KIFYSQIGFTVITFILGSRALLSSHIPFFSW-LPALLLLFDSTLAFASLLYLDFSRENTT 89
Query: 67 CLLK 56
C L+
Sbjct: 90 CYLR 93
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 42 KNEGVFNKHHVLFDAMIMYKTY-VNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVA 218
K E F+++ + ++M Y +N++ A ++ N E+F + I ++S +V+
Sbjct: 252 KFEATFSRNPGFYIVLVMIPAYFINVLSIVALFMDINNRSEKFTVGMTNIMSMSFILVIL 311
Query: 219 VPVNWENDNLSVL 257
+ NL +L
Sbjct: 312 AEDLPKTKNLPIL 324
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 335 LTRFST*FVLIYNFNSNEI*VVQMF 261
L FST ++LIYNF +N + ++ F
Sbjct: 20 LCLFSTMYILIYNFTTNVLKAMRYF 44
>Z99710-4|CAB16865.1| 660|Caenorhabditis elegans Hypothetical
protein F08A8.3 protein.
Length = 660
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 215 HNDFTAERKNFENGRDKLFAIV---NNVAAERRLVDQIHICLIHNHCIEQYVVFV 60
++D T ERKN DK+ A++ +A+ RR + + I IH + +VF+
Sbjct: 9 NSDLTEERKNATFDTDKMAAVIYGREEIASRRRQLTE-SISRIHELAESKPLVFM 62
>AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H
exchanger isoform 3 protein.
Length = 670
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 229 LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 50
+ G T SVK + CS+ +I + + T +V +I I + +CL+
Sbjct: 307 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 366
Query: 49 SFLSTKCLYTFFINK 5
+ +C F +NK
Sbjct: 367 IGIIVQC---FILNK 378
>AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchanger
protein 3, isoform b protein.
Length = 651
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 229 LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 50
+ G T SVK + CS+ +I + + T +V +I I + +CL+
Sbjct: 288 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 347
Query: 49 SFLSTKCLYTFFINK 5
+ +C F +NK
Sbjct: 348 IGIIVQC---FILNK 359
>AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchanger
protein 3, isoform a protein.
Length = 670
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 229 LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 50
+ G T SVK + CS+ +I + + T +V +I I + +CL+
Sbjct: 307 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 366
Query: 49 SFLSTKCLYTFFINK 5
+ +C F +NK
Sbjct: 367 IGIIVQC---FILNK 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,817,127
Number of Sequences: 27780
Number of extensions: 150420
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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