Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15f12
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   158   6e-40
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   133   2e-32
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    28   1.1  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.5  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   1.9  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   3.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   4.5  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   7.8  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  158 bits (383), Expect = 6e-40
 Identities = 82/155 (52%), Positives = 107/155 (69%), Gaps = 7/155 (4%)
 Frame = +3

Query: 126 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 284
           +PK ++ I  VGSGNWG+AIAKI G NA A   +F  +V MWV+EE IE K    KLTE+
Sbjct: 18  RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77

Query: 285 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 464
            NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++G I+P A
Sbjct: 78  FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137

Query: 465 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCAVL 569
             +S IKG  +++  G+ L S +I+  L I C VL
Sbjct: 138 VGISCIKGVAVSK-EGVRLYSEVISEKLGIYCGVL 171


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  133 bits (322), Expect = 2e-32
 Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 5/148 (3%)
 Frame = +3

Query: 141 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 305
           V I+GSGNWG+AIAKI G NA +  + F  +V MW+YEE I  EGK+  LTE+ N THEN
Sbjct: 27  VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86

Query: 306 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 485
           VKYL G K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +K  A A+S IK
Sbjct: 87  VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146

Query: 486 GFDIAEGGGIDLISHIITRCLKIPCAVL 569
           G  + +   + L S II     + C VL
Sbjct: 147 GVSVTK-DRVRLFSDIIEENTGMYCGVL 173


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 566 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 417
           YS   F   C+N+ +++DA T    KS  +  R SS     ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 316 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 218
           RY TFS + L+   N FP  ISS+  ++T   K
Sbjct: 26  RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 411 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 503
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 280 SVNFFPSIISSYTHIVTLSSKFDR 209
           +++  PSIISSYT +  L++K  R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 243  VYEEIIEGKKLTEIINETHENVKYL 317
            + ++ +  +K  E++NETHE  K+L
Sbjct: 969  IQQKYLASEKTLEMMNETHEQFKHL 993


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +3

Query: 312 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 467
           Y+PG +    V AV D VEA  K  D ++++ P     Q+     T+ S +  KI    A
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118

Query: 468 ALSLIKG 488
           + +L++G
Sbjct: 119 SAALLQG 125


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 135 NKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE--GKKLTEIINETHENV 308
           NK+ + GS   G+  A +  + AAS +NF   V   +   + +      T    E  EN 
Sbjct: 173 NKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENT 232

Query: 309 KYLPGHKL 332
             LP  K+
Sbjct: 233 PQLPAAKM 240


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 190 TIFAIAEPQFPDPTMQTLFFGCLSAISKILQSRTKYLN 77
           T FAI    F +P +       LS+ S  LQ+  +YLN
Sbjct: 513 TSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYLN 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,789
Number of Sequences: 5004
Number of extensions: 37713
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)