Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15f12
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 153 9e-38
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 60 2e-09
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.069
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 2.6
06_03_0298 - 19272257-19273714 29 2.6
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 2.6
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 4.6
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 27 8.0
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 27 8.0
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 153 bits (371), Expect = 9e-38
Identities = 69/130 (53%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +3
Query: 114 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE-GKKLTEIIN 290
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+ GKKL+E IN
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60
Query: 291 ETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAA 470
+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P
Sbjct: 61 QANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEG 120
Query: 471 LSLIKGFDIA 500
+SLIKG +IA
Sbjct: 121 ISLIKGMEIA 130
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/140 (29%), Positives = 66/140 (47%)
Frame = +3
Query: 138 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 317
KV ++G G++G+A+A V A L V+M + ++++ IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADLE-----VSMLLRDDLV-----CRSINHSHINCKYL 158
Query: 318 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 497
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
Query: 498 AEGGGIDLISHIITRCLKIP 557
+ +S II + L P
Sbjct: 219 ---NTLRTMSQIIPQALGNP 235
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.069
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 96 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 209
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 535 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 434
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 132 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 251
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 177 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 311
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 111 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 254
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +3
Query: 153 GSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKL 332
G WG I + G + + +S + +W +++ E +++ + E KY P H+
Sbjct: 174 GKKKWGMKIGRSKGGDKSKISTGD----LWKAQQLKEYRRIHGLCFRCGE--KYSPNHQC 227
Query: 333 PSNVVAVPDVVEAAKDADLL 392
A +VVE D+L
Sbjct: 228 AQIPAAQVNVVETIDHTDVL 247
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 556 GIFRHLVIICDIRSMPPPSAISNPLIKDRAA 464
G R V CD+R PPP PL +D AA
Sbjct: 77 GPLRETVAACDVRPRPPPPP-PPPLAEDGAA 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,842
Number of Sequences: 37544
Number of extensions: 232833
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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