Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15f10
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 357 LTLSRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFI 217
           L   RV    C+ +F+  +    C H VIV+ ++     L  LV+FI
Sbjct: 43  LKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDV-AFSDLHALVEFI 88


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 78  DQHYFTRLHYLTHLGGIFPLLVDI 7
           + HY +  H  THL G   + V +
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVNVSV 143


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 26  NIPPRWV 46
           N+PPRW+
Sbjct: 676 NVPPRWI 682


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 122 ITTKVPPTSRTGMPSSLVSTGTP 190
           IT + PP   T      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 348
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 348
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 253 VKVVNYNHLMPTRYTV 300
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 253 VKVVNYNHLMPTRYTV 300
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,543
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)