Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15f02
         (555 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;...   100   3e-20
UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P4...    72   8e-12
UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep: O...    60   3e-08
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    57   2e-07
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    45   0.001
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    43   0.004
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    43   0.006
UniRef50_Q4Y026 Cluster: Putative uncharacterized protein; n=5; ...    33   4.5  
UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...    33   4.5  

>UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 55.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 484

 Score =  100 bits (239), Expect = 3e-20
 Identities = 45/53 (84%), Positives = 50/53 (94%)
 Frame = +3

Query: 3   KNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLIPD 161
           K +K+FLVKH FSNTVPAYLL+RGDYES+SELKSLRDLNPWVQNTLL+LLI D
Sbjct: 419 KGKKIFLVKHTFSNTVPAYLLVRGDYESTSELKSLRDLNPWVQNTLLELLIVD 471


>UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P49 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 498

 Score = 72.1 bits (169), Expect = 8e-12
 Identities = 36/52 (69%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +3

Query: 3   KNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRDL-NPWVQNTLLKLLI 155
           K  K++L +++F NTVPAYLLIRGDYESS   KSL +L N WVQNTLLKLLI
Sbjct: 420 KTSKLYLTRYIFGNTVPAYLLIRGDYESS--FKSLHELKNSWVQNTLLKLLI 469


>UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep:
           ORF11 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 470

 Score = 60.5 bits (140), Expect = 3e-08
 Identities = 27/51 (52%), Positives = 36/51 (70%)
 Frame = +3

Query: 3   KNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLI 155
           K +K+F+  H F N    YLLIRGDYES S++K L+DL P VQN + +L+I
Sbjct: 412 KKQKIFISSHKFINGSSVYLLIRGDYESISDIKLLKDLTPLVQNAVFQLVI 462


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 57.2 bits (132), Expect = 2e-07
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394 PPSATG-FMNPLNATMRANPFMNTPQRQML 480
           PP+A G F+NPLNATMRANPFMNTPQRQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +1

Query: 394 PPSATG--FMNPLNATMRANPFMNTPQRQML 480
           PP   G  F+NPLNATMRANPF+N  QR ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 43.2 bits (97), Expect = 0.004
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +1

Query: 178 MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 357
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 358 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPQR 471
                      + P+A   M  PLN TMRANPF+ TPQR
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 397 PSATGFMNPLNATMRANPFMNTPQRQML 480
           P    + NPLNATMRANPF+N  QR ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q4Y026 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1235

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
 Frame = +3

Query: 3   KNEKVFLVKHVFSNTVPAY-LLIRGDYESSSELKSLRDLNPWVQNTL--LKLLIPDSV** 173
           KN+ +  +K   SN +  Y +L+R +  +S    ++R L  +V N L  + + +  ++  
Sbjct: 651 KNDYINFLKFKDSNKIQRYNMLLRRNDLTSQFFYNIRKLYSYVYNILDFIPIYVIQNILL 710

Query: 174 *YDL---HRSHYWRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFN 305
            Y     + +HY+ YD     +  LF   N +  +++   SSNY FN
Sbjct: 711 HYQKSYKNVNHYYYYDEPNDGINNLFNSYNEESEYEYTRYSSNY-FN 756


>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +3

Query: 498 MKRVKCNKVRTVTEI 542
           MKRV+CNKVRTVTE+
Sbjct: 1   MKRVRCNKVRTVTEV 15


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,369,715
Number of Sequences: 1657284
Number of extensions: 6633150
Number of successful extensions: 12426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12423
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)