Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e23
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    29   0.36 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   3.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.3  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   7.7  

>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 370 LADSPNQAARSAFPSSPVPTAP 435
           LAD+ NQA  +A P+S  PTAP
Sbjct: 220 LADAKNQAEGTASPASSTPTAP 241


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 29  VSLCKL--YRYYKINKPNDAHDRTEIPMIIVN 118
           ++LC +  Y YY+I K N      E+  I++N
Sbjct: 340 ITLCGIGVYNYYRITKGNKKEAEKEVEYIVLN 371


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 59  KINKPNDAHDRTEIPMIIVNNPEQPIHNPGALNTPSPKTRRNL*NHGILAFSSS 220
           +I  P   +  T I    V N   PI +   LNT +P T  ++ N      SSS
Sbjct: 371 QITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 468 ERSSLLQPLDLNGQVFSYLPKSVRVTVVGPP 560
           + S++LQPL++N  +    PKS+  +++  P
Sbjct: 518 KHSAVLQPLEVNRSISIPPPKSISPSILHKP 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,068
Number of Sequences: 5004
Number of extensions: 39962
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)