Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e23
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380...    29   3.4  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   4.5  
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082...    28   5.9  
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    28   5.9  

>02_02_0577 -
           11736474-11736609,11736756-11737003,11738002-11738087,
           11738557-11738633,11738813-11738846,11739922-11740037,
           11740121-11740659
          Length = 411

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 370 LADSPNQAARSAFPSSPVPTAP 435
           L+ +P+Q   S  P SP+PTAP
Sbjct: 12  LSTAPSQIQPSLIPDSPIPTAP 33


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 396 TISIPELSCSDRPANGQSCTIFRPERSSLLQPLDLNGQVFSYLPKSVRVTVVGPP 560
           T+S+P   C D+ A  +S T    + S++  PL   G   +    S + + V PP
Sbjct: 216 TVSLPSSECGDKVAQQESST----QESTVSLPLSECGDKVAQQESSTQESTVSPP 266


>06_03_1276 -
           28907726-28907842,28908012-28908062,28908146-28908254,
           28908345-28908430,28908537-28908650,28908731-28908790,
           28909088-28909303,28909401-28909514,28910632-28910853,
           28910946-28911050,28911136-28911276,28911368-28911472,
           28911538-28911645,28911753-28911911,28912060-28912140,
           28912219-28912330,28912433-28912515,28912631-28912669,
           28913061-28913126,28913601-28913643,28913969-28914036,
           28914264-28914323,28914409-28914529,28915167-28915267,
           28915354-28915494
          Length = 873

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 376 DSPNQAARSAFPSSPVPTAPQ 438
           + PN  A SA PS PVP  PQ
Sbjct: 5   EDPNGDASSASPSDPVPPPPQ 25


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 361 EHYLADSPNQAARSAFPSSPVPTAP 435
           +H  ++S NQ++ +A PS P PT P
Sbjct: 189 DHPRSESRNQSSSTAKPSMPAPTKP 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,775
Number of Sequences: 37544
Number of extensions: 269462
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)